RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 COL4A5P29400 1685 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 GNAT3A8MTJ3 354 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 DIAPH1O60610 1272 aaKnown RBP15.03■□□□□ -0
LIMCH1-221ENST00000515785 CELF2O95319 508 aaKnown RBP15.03■□□□□ -0
LIMCH1-221ENST00000515785 CIAPIN1Q6FI81 312 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 CLEC4GQ6UXB4 293 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 USP50Q70EL3 339 aaPredicted RBP15.03■□□□□ -0
LIMCH1-221ENST00000515785 LARGE2Q8N3Y3 721 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 ZNF652Q9Y2D9 606 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 PDE4DIPQ5VU43 2346 aa15.03■□□□□ -0
LIMCH1-221ENST00000515785 BTBD11A6QL63 1104 aa15.02■□□□□ -0
LIMCH1-221ENST00000515785 SOX10P56693 466 aa15.02■□□□□ -0
LIMCH1-221ENST00000515785 SLC51AQ86UW1 340 aa15.02■□□□□ -0
LIMCH1-221ENST00000515785 PSMD1Q99460 953 aa15.02■□□□□ -0
LIMCH1-221ENST00000515785 ZNF408Q9H9D4 720 aa15.02■□□□□ -0
LIMCH1-221ENST00000515785 CA12O43570 354 aa15.01□□□□□ -0.01
LIMCH1-221ENST00000515785 SAPCD2Q86UD0 394 aa15.01□□□□□ -0.01
LIMCH1-221ENST00000515785 GLIS2Q9BZE0 524 aaPredicted RBP15.01□□□□□ -0.01
LIMCH1-221ENST00000515785 SIPA1L3O60292 1781 aaPredicted RBP15.01□□□□□ -0.01
LIMCH1-221ENST00000515785 HSPA5P11021 654 aaKnown RBP15□□□□□ -0.01
LIMCH1-221ENST00000515785 HLFQ16534 295 aa15□□□□□ -0.01
LIMCH1-221ENST00000515785 ZIC5Q96T25 663 aa15□□□□□ -0.01
LIMCH1-221ENST00000515785 U2SURPO15042 1029 aaKnown RBP14.99□□□□□ -0.01
LIMCH1-221ENST00000515785 BRPF1P55201 1214 aaPredicted RBP14.99□□□□□ -0.01
LIMCH1-221ENST00000515785 NUTM1Q86Y26 1132 aa14.99□□□□□ -0.01
LIMCH1-221ENST00000515785 NBPF26B4DH59 902 aa14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 CNGB1Q14028 1251 aaPredicted RBP14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 NBPF10Q6P3W6 841 aaKnown RBP14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 NIM1KQ8IY84 436 aa14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 NGEFQ8N5V2 710 aa14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 NBPF15Q8N660 670 aa14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 GAS2L2Q8NHY3 880 aa14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 ADARB2Q9NS39 739 aaKnown RBP14.98□□□□□ -0.01
LIMCH1-221ENST00000515785 CC2D2BQ6DHV5 1058 aa14.97□□□□□ -0.01
LIMCH1-221ENST00000515785 RPGRQ92834 1020 aaKnown RBP14.97□□□□□ -0.01
LIMCH1-221ENST00000515785 GPRC5DQ9NZD1 345 aa14.97□□□□□ -0.01
LIMCH1-221ENST00000515785 PPIP5K2O43314 1243 aa14.96□□□□□ -0.01
LIMCH1-221ENST00000515785 EIF4G2P78344 907 aaKnown RBP eCLIP14.96□□□□□ -0.01
LIMCH1-221ENST00000515785 AMER1Q5JTC6 1135 aaPredicted RBP14.96□□□□□ -0.01
LIMCH1-221ENST00000515785 SNED1Q8TER0 1413 aa14.96□□□□□ -0.01
LIMCH1-221ENST00000515785 SNRPA1P09661 255 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-221ENST00000515785 GMPSP49915 693 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-221ENST00000515785 AOC3Q16853 763 aa14.95□□□□□ -0.02
LIMCH1-221ENST00000515785 DLK2Q6UY11 383 aa14.95□□□□□ -0.02
LIMCH1-221ENST00000515785 ABCC12Q96J65 1359 aa14.95□□□□□ -0.02
LIMCH1-221ENST00000515785 PPEF1O14829 653 aaPredicted RBP14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 CXCL9Q07325 125 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 CRY2Q49AN0 593 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 CC2D1BQ5T0F9 858 aaKnown RBP14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 USP48Q86UV5 1035 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 HHIPL1Q96JK4 782 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 PHACTR3Q96KR7 559 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 NPC1L1Q9UHC9 1359 aa14.94□□□□□ -0.02
LIMCH1-221ENST00000515785 HIRAP54198 1017 aaPredicted RBP14.93□□□□□ -0.02
LIMCH1-221ENST00000515785 HUNKP57058 714 aa14.93□□□□□ -0.02
LIMCH1-221ENST00000515785 RBM17Q96I25 401 aaKnown RBP14.93□□□□□ -0.02
LIMCH1-221ENST00000515785 BCL2L13Q9BXK5 485 aa14.93□□□□□ -0.02
LIMCH1-221ENST00000515785 NYXQ9GZU5 481 aa14.93□□□□□ -0.02
LIMCH1-221ENST00000515785 GPTP24298 496 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 HOXA10P31260 410 aaPredicted RBP14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 NOGQ13253 232 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 PRPF38BQ5VTL8 546 aaKnown RBP14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 CDC37L1Q7L3B6 337 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 MCM10Q7L590 875 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 PGAP2Q9UHJ9 254 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 ZNRF3Q9ULT6 936 aa14.92□□□□□ -0.02
LIMCH1-221ENST00000515785 CEMIPQ8WUJ3 1361 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 SHTN1A0MZ66 631 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 TRPA1O75762 1119 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 RAD17O75943 681 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 KIF23Q02241 960 aaPredicted RBP14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 GRIPAP1Q4V328 841 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 C3orf67Q6ZVT6 689 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 TRPM4Q8TD43 1214 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 CRAMP1Q96RY5 1269 aa14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 TMX4Q9H1E5 349 aaPredicted RBP14.91□□□□□ -0.02
LIMCH1-221ENST00000515785 NUP98P52948 1817 aa14.9□□□□□ -0.02
LIMCH1-221ENST00000515785 SUSD4Q5VX71 490 aa14.9□□□□□ -0.02
LIMCH1-221ENST00000515785 RGL2O15211 777 aa14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 DCTN1Q14203 1278 aa14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 RNF186Q9NXI6 227 aa14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 MIS18AQ9NYP9 233 aa14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 CNOT7Q9UIV1 285 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 RRP7AQ9Y3A4 280 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-221ENST00000515785 POLR2AP24928 1970 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 FAM155AB1AL88 458 aaPredicted RBP14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 PRKAR2BP31323 418 aa14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 RGMBQ6NW40 437 aa14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 TTLL7Q6ZT98 887 aa14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 ZC3H15Q8WU90 426 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 RTF1Q92541 710 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 TIMELESSQ9UNS1 1208 aa14.88□□□□□ -0.03
LIMCH1-221ENST00000515785 ZNF157P51786 506 aaPredicted RBP14.87□□□□□ -0.03
LIMCH1-221ENST00000515785 TNIP1Q15025 636 aa14.87□□□□□ -0.03
LIMCH1-221ENST00000515785 ZBTB3Q9H5J0 574 aa14.87□□□□□ -0.03
LIMCH1-221ENST00000515785 ATP6V0A2Q9Y487 856 aa14.87□□□□□ -0.03
LIMCH1-221ENST00000515785 KIF7Q2M1P5 1343 aa14.87□□□□□ -0.03
LIMCH1-221ENST00000515785 AKAP11Q9UKA4 1901 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 H7C1D1 291 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms