RNA–Protein interactions for RNA: ENST00000515143.5

SPOCK3-223, Transcript of SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, human

TSL 4

Gene SPOCK3, Length 565 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPOCK3-223	ENST00000515143	PPP1R42	Q7Z4L9	355 aa		9.47	□□□□□ -0.89
SPOCK3-223	ENST00000515143	CCDC24	Q8N4L8	307 aa		9.47	□□□□□ -0.89
SPOCK3-223	ENST00000515143	L3MBTL3	Q96JM7	780 aa	Predicted RBP	9.47	□□□□□ -0.89
SPOCK3-223	ENST00000515143	RRAGC	Q9HB90	399 aa		9.47	□□□□□ -0.89
SPOCK3-223	ENST00000515143	ARFGEF2	Q9Y6D5	1785 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	MYL6B	P14649	208 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	FKBP4	Q02790	459 aa	Known RBP eCLIP	9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CALD1	Q05682	793 aa	Known RBP	9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	PROSER3	Q2NL68	480 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ERFE	Q4G0M1	354 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CCDC93	Q567U6	631 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	HSP90AB3P	Q58FF7	597 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	COPS6	Q7L5N1	327 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CHMP4A	Q9BY43	222 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	TAOK3	Q9H2K8	898 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	IFT57	Q9NWB7	429 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	DBF4	Q9UBU7	674 aa	Predicted RBP	9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NUP98	P52948	1817 aa		9.46	□□□□□ -0.9
SPOCK3-223	ENST00000515143	COL11A2	P13942	1736 aa	Predicted RBP	9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	DICER1	Q9UPY3	1922 aa	Known RBP	9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	FZD9	O00144	591 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	GNAI1	P63096	354 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NLRP10	Q86W26	655 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CCDC146	Q8IYE0	955 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	PLBD2	Q8NHP8	589 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ISCA1	Q9BUE6	129 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	HYPK	Q9NX55	129 aa		9.45	□□□□□ -0.9
SPOCK3-223	ENST00000515143	APAF1	O14727	1248 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NPHP1	O15259	732 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	BBOX1	O75936	387 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	EIF2S2	P20042	333 aa	Known RBP	9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	DUSP27	Q5VZP5	1158 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ANKRD13D	Q6ZTN6	518 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NGEF	Q8N5V2	710 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	XAGE3	Q8WTP9	111 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NLRP3	Q96P20	1036 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	UTP14A	Q9BVJ6	771 aa	Known RBP	9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	RTFDC1	Q9BY42	306 aa	Predicted RBP	9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ZBTB3	Q9H5J0	574 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	MBIP	Q9NS73	344 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ABCC12	Q96J65	1359 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	WDR90	Q96KV7	1748 aa		9.44	□□□□□ -0.9
SPOCK3-223	ENST00000515143	TNRC6C	Q9HCJ0	1690 aa	Known RBP	9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	GTF2E1	P29083	439 aa	Predicted RBP	9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	SF3B3	Q15393	1217 aa	Known RBP	9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NEUROD2	Q15784	382 aa		9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	KRT24	Q2M2I5	525 aa		9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	NUTM1	Q86Y26	1132 aa		9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	JMY	Q8N9B5	988 aa		9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	SMC1B	Q8NDV3	1235 aa		9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	RBM17	Q96I25	401 aa	Known RBP	9.43	□□□□□ -0.9
SPOCK3-223	ENST00000515143	IL16	Q14005	1332 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	GPT	P24298	496 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	HDGFL1	Q5TGJ6	251 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	TMC4	Q7Z404	712 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	SP8	Q8IXZ3	490 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	C16orf71	Q8IYS4	520 aa	Predicted RBP	9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	SYNE4	Q8N205	404 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ATP6V0A2	Q9Y487	856 aa		9.42	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CCDC88A	Q3V6T2	1871 aa		9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ZNF316	A6NFI3	1004 aa	Predicted RBP	9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	DDN	O94850	711 aa	Predicted RBP	9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ANXA1	P04083	346 aa		9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	IARS	P41252	1262 aa	Known RBP	9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CCDC184	Q52MB2	194 aa		9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	C3orf67	Q6ZVT6	689 aa		9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	RPGR	Q92834	1020 aa	Known RBP	9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	CHPF2	Q9P2E5	772 aa		9.41	□□□□□ -0.9
SPOCK3-223	ENST00000515143	SH3TC1	Q8TE82	1336 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	IQCA1L	A6NCM1	817 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	FAM177B	A6PVY3	158 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	OLFM4	Q6UX06	510 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	WWC1	Q8IX03	1113 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	GPC2	Q8N158	579 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	C8orf58	Q8NAV2	365 aa		9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ZNF277	Q9NRM2	450 aa	Predicted RBP	9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	ZNF219	Q9P2Y4	722 aa	Predicted RBP	9.4	□□□□□ -0.9
SPOCK3-223	ENST00000515143	WDR63	Q8IWG1	891 aa		9.39	□□□□□ -0.91
SPOCK3-223	ENST00000515143	KLRG1	Q96E93	195 aa		9.39	□□□□□ -0.91
SPOCK3-223	ENST00000515143	TAF1D	Q9H5J8	278 aa	Predicted RBP	9.39	□□□□□ -0.91
SPOCK3-223	ENST00000515143	TRMT112	Q9UI30	125 aa	Known RBP	9.39	□□□□□ -0.91
SPOCK3-223	ENST00000515143	PASK	Q96RG2	1323 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	ANKRD36C	Q5JPF3	1778 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	ITGBL1	O95965	494 aa	Predicted RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	HSP90B1	P14625	803 aa	Known RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	AIMP1	Q12904	312 aa	Known RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	GRAP	Q13588	217 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	CCDC30	Q5VVM6	783 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	CHADL	Q6NUI6	762 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	PNMA8A	Q86V59	439 aa	Predicted RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	LDHD	Q86WU2	507 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	CCDC191	Q8NCU4	936 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	SUPT20H	Q8NEM7	779 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	GRAPL	Q8TC17	118 aa	Predicted RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	LAS1L	Q9Y4W2	734 aa	Known RBP	9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	SCN4A	P35499	1836 aa		9.38	□□□□□ -0.91
SPOCK3-223	ENST00000515143	ABCC4	O15439	1325 aa		9.37	□□□□□ -0.91
SPOCK3-223	ENST00000515143	TIAM2	Q8IVF5	1701 aa		9.37	□□□□□ -0.91
SPOCK3-223	ENST00000515143	PPEF1	O14829	653 aa	Predicted RBP	9.37	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms