RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 PHF14O94880 888 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 POLD1P28340 1107 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 RFC4P35249 363 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 FHDC1Q9C0D6 1143 aaPredicted RBP16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 CWC25Q9NXE8 425 aaPredicted RBP16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 ZNF652Q9Y2D9 606 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 PCDHB15Q9Y5E8 787 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 UTYO14607 1347 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 H7C1W4 665 aa16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 GNAI2P04899 355 aa16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 NBPF7P0C2Y1 421 aaPredicted RBP16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 UBTFL1P0CB47 393 aaPredicted RBP16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 USPL1Q5W0Q7 1092 aa16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 BCL2L12Q9HB09 334 aa16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 SRP68Q9UHB9 627 aaKnown RBP16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 HDAC5Q9UQL6 1122 aa16.33■□□□□ 0.2
LIMCH1-220ENST00000514190 NLRP10Q86W26 655 aa16.32■□□□□ 0.2
LIMCH1-220ENST00000514190 CCDC136Q96JN2 1154 aa16.32■□□□□ 0.2
LIMCH1-220ENST00000514190 USP42Q9H9J4 1324 aaKnown RBP16.32■□□□□ 0.2
LIMCH1-220ENST00000514190 ARFGEF2Q9Y6D5 1785 aa16.31■□□□□ 0.2
LIMCH1-220ENST00000514190 GPTP24298 496 aa16.31■□□□□ 0.2
LIMCH1-220ENST00000514190 SYT17Q9BSW7 474 aa16.31■□□□□ 0.2
LIMCH1-220ENST00000514190 C1orf115Q9H7X2 142 aa16.31■□□□□ 0.2
LIMCH1-220ENST00000514190 CASP7P55210 303 aa16.3■□□□□ 0.2
LIMCH1-220ENST00000514190 PARP10Q53GL7 1025 aa16.3■□□□□ 0.2
LIMCH1-220ENST00000514190 B4GALNT3Q6L9W6 998 aa16.3■□□□□ 0.2
LIMCH1-220ENST00000514190 RPAP2Q8IXW5 612 aaPredicted RBP16.3■□□□□ 0.2
LIMCH1-220ENST00000514190 N4BP2Q86UW6 1770 aaPredicted RBP16.3■□□□□ 0.2
LIMCH1-220ENST00000514190 UTRNP46939 3433 aa16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 DCAF8L1A6NGE4 600 aa16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 PCCAP05165 728 aaPredicted RBP16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 MSL1Q68DK7 614 aa16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 UBE3BQ7Z3V4 1068 aa16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 NIP7Q9Y221 180 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 LRRFIP2Q9Y608 721 aaKnown RBP16.29■□□□□ 0.2
LIMCH1-220ENST00000514190 UBN2Q6ZU65 1347 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 SUSD4Q5VX71 490 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 TBC1D9BQ66K14 1250 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 CEP85Q6P2H3 762 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 ANKRD44Q8N8A2 993 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 ZBTB38Q8NAP3 1195 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 JARID2Q92833 1246 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 RWDD1Q9H446 243 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-220ENST00000514190 GYS1P13807 737 aa16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 HDAC1Q13547 482 aaPredicted RBP16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 SIRT2Q8IXJ6 389 aa16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 KAZALD1Q96I82 304 aa16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 SETDB2Q96T68 719 aa16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 UTP14AQ9BVJ6 771 aaKnown RBP16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 TRMT112Q9UI30 125 aaKnown RBP16.27■□□□□ 0.2
LIMCH1-220ENST00000514190 IGHDP01880 384 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 ATP8B2P98198 1209 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 PPP1R42Q7Z4L9 355 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 KLHL34Q8N239 644 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 FAM89AQ96GI7 184 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 NUP98P52948 1817 aa16.26■□□□□ 0.19
LIMCH1-220ENST00000514190 CDHR2Q9BYE9 1310 aa16.25■□□□□ 0.19
LIMCH1-220ENST00000514190 RTL5Q5HYW3 569 aaPredicted RBP16.25■□□□□ 0.19
LIMCH1-220ENST00000514190 BICDL1Q6ZP65 573 aa16.25■□□□□ 0.19
LIMCH1-220ENST00000514190 NTSR2O95665 410 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 TM4SF1P30408 202 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 MTX1Q13505 466 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 NFIXQ14938 502 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 EPHA10Q5JZY3 1008 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 NLGN1Q8N2Q7 840 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 PLA2G12BQ9BX93 195 aa16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 BICC1Q9H694 974 aaKnown RBP16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 GOLGB1Q14789 3259 aaKnown RBP16.24■□□□□ 0.19
LIMCH1-220ENST00000514190 BCORQ6W2J9 1755 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 KDM2BQ8NHM5 1336 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 SH3TC1Q8TE82 1336 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 FAM177BA6PVY3 158 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 HMMRO75330 724 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 FOXO4P98177 505 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 RABL6Q3YEC7 729 aaPredicted RBP16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 SYNE4Q8N205 404 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 SCN7AQ01118 1682 aa16.23■□□□□ 0.19
LIMCH1-220ENST00000514190 C4AP0C0L4 1744 aa16.22■□□□□ 0.19
LIMCH1-220ENST00000514190 IRS4O14654 1257 aaPredicted RBP16.22■□□□□ 0.19
LIMCH1-220ENST00000514190 CENPQQ7L2Z9 268 aaPredicted RBP16.22■□□□□ 0.19
LIMCH1-220ENST00000514190 SSH3Q8TE77 659 aa16.22■□□□□ 0.19
LIMCH1-220ENST00000514190 NYXQ9GZU5 481 aa16.22■□□□□ 0.19
LIMCH1-220ENST00000514190 ANKRD36CQ5JPF3 1778 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 PNMA6EA0A0J9YXQ4 647 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 HSP90B1P14625 803 aaKnown RBP16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 POLA2Q14181 598 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 SLC10A5Q5PT55 438 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 TPTE2Q6XPS3 522 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 NBPF5PQ86XG9 351 aaPredicted RBP16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 DCTPP1Q9H773 170 aa16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 AFDNP55196 1824 aaKnown RBP16.21■□□□□ 0.19
LIMCH1-220ENST00000514190 SRGAP3O43295 1099 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 CSF1RP07333 972 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 LMBR1LQ6UX01 489 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 SMC5Q8IY18 1101 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 NLGN2Q8NFZ4 835 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 CARMIL3Q8ND23 1372 aa16.2■□□□□ 0.18
LIMCH1-220ENST00000514190 PDE8AO60658 829 aa16.19■□□□□ 0.18
LIMCH1-220ENST00000514190 ERFEQ4G0M1 354 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms