RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 USP16Q9Y5T5 823 aa12.4□□□□□ -0.42
TPM3-221ENST00000513769 VIRMAQ69YN4 1812 aaKnown RBP12.39□□□□□ -0.43
TPM3-221ENST00000513769 A0A0G2JS52 829 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 ALDH1L1O75891 902 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 MYT1Q01538 1121 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 PDIA6Q15084 440 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 PPP1R15BQ5SWA1 713 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 KRT27Q7Z3Y8 459 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 SMC5Q8IY18 1101 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 DNAAF4Q8WXU2 420 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 PIGBQ92521 554 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 PHAXQ9H814 394 aaKnown RBP12.39□□□□□ -0.43
TPM3-221ENST00000513769 CHPF2Q9P2E5 772 aa12.39□□□□□ -0.43
TPM3-221ENST00000513769 EP400Q96L91 3159 aa12.38□□□□□ -0.43
TPM3-221ENST00000513769 STARD3NLO95772 234 aa12.38□□□□□ -0.43
TPM3-221ENST00000513769 HMGB2P26583 209 aaKnown RBP12.38□□□□□ -0.43
TPM3-221ENST00000513769 ANKRD13DQ6ZTN6 518 aa12.38□□□□□ -0.43
TPM3-221ENST00000513769 SRCIN1Q9C0H9 1055 aa12.38□□□□□ -0.43
TPM3-221ENST00000513769 GLI3P10071 1580 aa12.38□□□□□ -0.43
TPM3-221ENST00000513769 PI4KAP2A4QPH2 592 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 TBC1D12O60347 775 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 HMMRO75330 724 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 GNAI2P04899 355 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 PDE4AP27815 886 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 PBX2P40425 430 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 LSM11P83369 360 aaKnown RBP eCLIP12.37□□□□□ -0.43
TPM3-221ENST00000513769 POTEEQ6S8J3 1075 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 SLC4A10Q6U841 1118 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 PI4KAP1Q8N8J0 262 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 SMARCC1Q92922 1105 aaPredicted RBP12.37□□□□□ -0.43
TPM3-221ENST00000513769 ATG3Q9NT62 314 aa12.37□□□□□ -0.43
TPM3-221ENST00000513769 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.37□□□□□ -0.43
TPM3-221ENST00000513769 PLCH1Q4KWH8 1693 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 PXDNLA1KZ92 1463 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 BAG6P46379 1132 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 BEND3Q5T5X7 828 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 ANKRD44Q8N8A2 993 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 LINS1Q8NG48 757 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 NECTIN2Q92692 538 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 USP44Q9H0E7 712 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 DCTPP1Q9H773 170 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 BCL9O00512 1426 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 ATP10DQ9P241 1426 aa12.36□□□□□ -0.43
TPM3-221ENST00000513769 PSDA5PKW4 1024 aaPredicted RBP12.35□□□□□ -0.43
TPM3-221ENST00000513769 F6X3S4 739 aa12.35□□□□□ -0.43
TPM3-221ENST00000513769 PRIM1P49642 420 aaKnown RBP12.35□□□□□ -0.43
TPM3-221ENST00000513769 ATP8B2P98198 1209 aa12.35□□□□□ -0.43
TPM3-221ENST00000513769 NEXNQ0ZGT2 675 aa12.35□□□□□ -0.43
TPM3-221ENST00000513769 MARCH10Q8NA82 808 aaPredicted RBP12.35□□□□□ -0.43
TPM3-221ENST00000513769 OXER1Q8TDS5 423 aa12.35□□□□□ -0.43
TPM3-221ENST00000513769 RNF166Q96A37 237 aaPredicted RBP12.35□□□□□ -0.43
TPM3-221ENST00000513769 TNS2Q63HR2 1409 aa12.35□□□□□ -0.43
TPM3-221ENST00000513769 NRAPQ86VF7 1730 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 COPS6Q7L5N1 327 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 LRP10Q7Z4F1 713 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 RIC3Q7Z5B4 369 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 PLBD2Q8NHP8 589 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 BRWD3Q6RI45 1802 aa12.34□□□□□ -0.43
TPM3-221ENST00000513769 PRAMEF22A3QJZ6 481 aa12.33□□□□□ -0.44
TPM3-221ENST00000513769 FAM98CQ17RN3 349 aaKnown RBP12.33□□□□□ -0.44
TPM3-221ENST00000513769 METTL22Q9BUU2 404 aaPredicted RBP12.33□□□□□ -0.44
TPM3-221ENST00000513769 RTN4Q9NQC3 1192 aaKnown RBP12.33□□□□□ -0.44
TPM3-221ENST00000513769 ASAP1Q9ULH1 1129 aa12.33□□□□□ -0.44
TPM3-221ENST00000513769 MAP3K2Q9Y2U5 619 aa12.33□□□□□ -0.44
TPM3-221ENST00000513769 UTYO14607 1347 aa12.33□□□□□ -0.44
TPM3-221ENST00000513769 PTCD1O75127 700 aaKnown RBP12.32□□□□□ -0.44
TPM3-221ENST00000513769 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
TPM3-221ENST00000513769 NUCB1Q02818 461 aa12.32□□□□□ -0.44
TPM3-221ENST00000513769 SIRT2Q8IXJ6 389 aa12.32□□□□□ -0.44
TPM3-221ENST00000513769 LARP6Q9BRS8 491 aaKnown RBP12.32□□□□□ -0.44
TPM3-221ENST00000513769 SHANK3Q9BYB0 1731 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 PTGER2P43116 358 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 TRIM28Q13263 835 aaKnown RBP12.31□□□□□ -0.44
TPM3-221ENST00000513769 CEP85Q6P2H3 762 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 XAGE3Q8WTP9 111 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 MEIS3Q99687 375 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 C9orf78Q9NZ63 289 aaPredicted RBP12.31□□□□□ -0.44
TPM3-221ENST00000513769 PDZRN3Q9UPQ7 1066 aa12.31□□□□□ -0.44
TPM3-221ENST00000513769 MYL6BP14649 208 aa12.3□□□□□ -0.44
TPM3-221ENST00000513769 EN1Q05925 392 aaPredicted RBP12.3□□□□□ -0.44
TPM3-221ENST00000513769 PROSER3Q2NL68 480 aa12.3□□□□□ -0.44
TPM3-221ENST00000513769 CHD1LQ86WJ1 897 aa12.3□□□□□ -0.44
TPM3-221ENST00000513769 DDX27Q96GQ7 796 aaKnown RBP12.3□□□□□ -0.44
TPM3-221ENST00000513769 ADCY9O60503 1353 aa12.3□□□□□ -0.44
TPM3-221ENST00000513769 NBPF26B4DH59 902 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 EIF5BO60841 1220 aaKnown RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 A1BGP04217 495 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 CYP19A1P11511 503 aaPredicted RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 IL6STP40189 918 aaPredicted RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 AIMP1Q12904 312 aaKnown RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 MTX1Q13505 466 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 HSP90AB4PQ58FF6 505 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 FAM182BQ5T319 152 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 NBPF14Q5TI25 921 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 NBPF10Q6P3W6 841 aaKnown RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 NPM2Q86SE8 214 aaKnown RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 NBPF15Q8N660 670 aa12.29□□□□□ -0.44
TPM3-221ENST00000513769 SYTL4Q96C24 671 aaPredicted RBP12.29□□□□□ -0.44
TPM3-221ENST00000513769 UBR2Q8IWV8 1755 aa12.28□□□□□ -0.44
TPM3-221ENST00000513769 KCPQ6ZWJ8 1503 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms