RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 ELOA3Q8NG57 546 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 C7orf43Q8WVR3 580 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 MKNK1Q9BUB5 465 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 UBE2OQ9C0C9 1292 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 HCN2Q9UL51 889 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 ACIN1Q9UKV3 1341 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 TGFBR3LH3BV60 316 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 WEE1P30291 646 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 GSK3AP49840 483 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 SWI5Q1ZZU3 235 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 POTEAQ6S8J7 498 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 STK32AQ8WU08 396 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 PBXIP1Q96AQ6 731 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 DCAF5Q96JK2 942 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 NOP53Q9NZM5 478 aaKnown RBP5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 KLF15Q9UIH9 416 aa5.18□□□□□ -1.58
LIMCH1-212ENST00000511424 SIN3BO75182 1162 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 ADH7P40394 386 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 IDH3AP50213 366 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 FKBP5Q13451 457 aaPredicted RBP5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 C11orf91Q3C1V1 193 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 KRT25Q7Z3Z0 450 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 ZMIZ1Q9ULJ6 1067 aa5.17□□□□□ -1.58
LIMCH1-212ENST00000511424 ATG7O95352 703 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 CCINQ13939 588 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 ELOAQ14241 798 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 TMEM164Q5U3C3 297 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 IER5Q5VY09 327 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 CCDC82Q8N4S0 544 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 IFT43Q96FT9 208 aa5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 QTRT2Q9H974 415 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.16□□□□□ -1.58
LIMCH1-212ENST00000511424 SPDYE3A6NKU9 549 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 M0R082 166 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 MICAL2O94851 1124 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 NFKB1P19838 968 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 DGKGP49619 791 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 ARSDP51689 593 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 KCNQ4P56696 695 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 NAA30Q147X3 362 aaPredicted RBP5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 RGL4Q8IZJ4 473 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 ZNF417Q8TAU3 575 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 ZNF587Q96SQ5 575 aaPredicted RBP5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 SUV39H2Q9H5I1 410 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 BCS1LQ9Y276 419 aa5.15□□□□□ -1.59
LIMCH1-212ENST00000511424 MSTNO14793 375 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 IGHA1P01876 353 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 PLA2G4EQ3MJ16 856 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 LINC00114Q6XXX2 140 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 TREML1Q86YW5 311 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 CMTR1Q8N1G2 835 aaKnown RBP5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 TNFRSF25Q93038 417 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 PLVAPQ9BX97 442 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 USP20Q9Y2K6 914 aa5.14□□□□□ -1.59
LIMCH1-212ENST00000511424 ADARB2-AS1A8MUL3 147 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 SASH3O75995 380 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 RARAP10276 462 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 BRD2P25440 801 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 ARID4AP29374 1257 aaPredicted RBP5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 INPP5BP32019 993 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 PRRT3Q5FWE3 981 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 COX20Q5RI15 118 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 C16orf46Q6P387 395 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 ALYREFQ86V81 257 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 NUDT8Q8WV74 236 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 MYO19Q96H55 970 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 GSX2Q9BZM3 304 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 EFCC1Q9HA90 598 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 JPH1Q9HDC5 661 aaPredicted RBP5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 CXXC1Q9P0U4 656 aaPredicted RBP5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 LRFN2Q9ULH4 789 aa5.13□□□□□ -1.59
LIMCH1-212ENST00000511424 LILRB5O75023 590 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 PTCD1O75127 700 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 ALBP02768 609 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 ATP2B4P23634 1241 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 TARSP26639 723 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 COL8A1P27658 744 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 PCSK7Q16549 785 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 TRAPPC3LQ5T215 181 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 C8orf86Q6ZUL3 223 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 FAM35AQ86V20 835 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 DNAJB12Q9NXW2 375 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 SLC6A14Q9UN76 642 aa5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 RTCBQ9Y3I0 505 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-212ENST00000511424 KRBA1A5PL33 1030 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 XYLBO75191 536 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 RGS9O75916 674 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 APBA3O96018 575 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 CPB1P15086 417 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 HOXB4P17483 251 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 SRPK2P78362 688 aaKnown RBP5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 MLLT1Q03111 559 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 FAM69CQ0P6D2 419 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 TRIM28Q13263 835 aaKnown RBP5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 OCLNQ16625 522 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 PSAPL1Q6NUJ1 521 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 MICALL1Q8N3F8 863 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 TRIM11Q96F44 468 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 ARID3AQ99856 593 aa5.11□□□□□ -1.59
LIMCH1-212ENST00000511424 SAP130Q9H0E3 1048 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms