RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 TTC5Q8N0Z6 440 aa21.52■■□□□ 1.04
CCHCR1-228ENST00000509552 TMEM87AQ8NBN3 555 aa21.52■■□□□ 1.04
CCHCR1-228ENST00000509552 PDLIM2Q96JY6 352 aa21.52■■□□□ 1.04
CCHCR1-228ENST00000509552 MYD88Q99836 296 aa21.52■■□□□ 1.04
CCHCR1-228ENST00000509552 ALS2Q96Q42 1657 aa21.52■■□□□ 1.04
CCHCR1-228ENST00000509552 SCN11AQ9UI33 1791 aa21.52■■□□□ 1.03
CCHCR1-228ENST00000509552 ATF3P18847 181 aa21.51■■□□□ 1.03
CCHCR1-228ENST00000509552 SYT1P21579 422 aa21.51■■□□□ 1.03
CCHCR1-228ENST00000509552 TSPY26PQ9H489 355 aa21.51■■□□□ 1.03
CCHCR1-228ENST00000509552 ADCK5Q3MIX3 580 aa21.51■■□□□ 1.03
CCHCR1-228ENST00000509552 RBM8AQ9Y5S9 174 aaKnown RBP21.51■■□□□ 1.03
CCHCR1-228ENST00000509552 GADD45BO75293 160 aaPredicted RBP21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 SNRPA1P09661 255 aaKnown RBP21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 NMIQ13287 307 aaPredicted RBP21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 ANKRD13DQ6ZTN6 518 aa21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 MAP4K1Q92918 833 aa21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 ZNF496Q96IT1 587 aaPredicted RBP21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 FSD1Q9BTV5 496 aa21.5■■□□□ 1.03
CCHCR1-228ENST00000509552 C5P01031 1676 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 PSMA5P28066 241 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 CREB3L3Q68CJ9 461 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 CCDC83Q8IWF9 413 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 FAM227BQ96M60 508 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 BOLA2Q9H3K6 86 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 F13A1P00488 732 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 DCAF5Q96JK2 942 aa21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 TLR7Q9NYK1 1049 aaKnown RBP21.49■■□□□ 1.03
CCHCR1-228ENST00000509552 RNF20Q5VTR2 975 aa21.48■■□□□ 1.03
CCHCR1-228ENST00000509552 SNRKQ9NRH2 765 aa21.48■■□□□ 1.03
CCHCR1-228ENST00000509552 MEGF6O75095 1541 aa21.48■■□□□ 1.03
CCHCR1-228ENST00000509552 LARGE1O95461 756 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 GJB2P29033 226 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 CNPY2Q9Y2B0 182 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 PLEKHG2Q9H7P9 1386 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 KLHDC4Q8TBB5 520 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 FMNL2Q96PY5 1086 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 ABCC6O95255 1503 aa21.47■■□□□ 1.03
CCHCR1-228ENST00000509552 CSPP1Q1MSJ5 1256 aa21.46■■□□□ 1.03
CCHCR1-228ENST00000509552 EPHA10Q5JZY3 1008 aa21.46■■□□□ 1.03
CCHCR1-228ENST00000509552 RNF214Q8ND24 703 aa21.46■■□□□ 1.03
CCHCR1-228ENST00000509552 COPRSQ9NQ92 184 aa21.46■■□□□ 1.03
CCHCR1-228ENST00000509552 USP16Q9Y5T5 823 aa21.46■■□□□ 1.03
CCHCR1-228ENST00000509552 UBE2HP62256 183 aa21.45■■□□□ 1.02
CCHCR1-228ENST00000509552 MRC1P22897 1456 aa21.45■■□□□ 1.02
CCHCR1-228ENST00000509552 SLC27A2O14975 620 aa21.45■■□□□ 1.02
CCHCR1-228ENST00000509552 LETM1O95202 739 aaPredicted RBP21.45■■□□□ 1.02
CCHCR1-228ENST00000509552 CCDC183Q5T5S1 534 aa21.45■■□□□ 1.02
CCHCR1-228ENST00000509552 A0A0D9SFI3 127 aa21.44■■□□□ 1.02
CCHCR1-228ENST00000509552 NOL7Q9UMY1 257 aaKnown RBP21.44■■□□□ 1.02
CCHCR1-228ENST00000509552 PDIA4P13667 645 aaKnown RBP21.44■■□□□ 1.02
CCHCR1-228ENST00000509552 ANKRD1Q15327 319 aa21.44■■□□□ 1.02
CCHCR1-228ENST00000509552 ME3Q16798 604 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 LRP10Q7Z4F1 713 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 DDX17Q92841 729 aaKnown RBP21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 TCHHQ07283 1943 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 CYP27B1O15528 508 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 CABP4P57796 275 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 BLOC1S2Q6QNY1 142 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 FAM184AQ8NB25 1140 aa21.43■■□□□ 1.02
CCHCR1-228ENST00000509552 MED23Q9ULK4 1368 aa21.42■■□□□ 1.02
CCHCR1-228ENST00000509552 DDX54Q8TDD1 881 aaKnown RBP21.42■■□□□ 1.02
CCHCR1-228ENST00000509552 HMG20BQ9P0W2 317 aa21.42■■□□□ 1.02
CCHCR1-228ENST00000509552 CCDC39Q9UFE4 941 aa21.42■■□□□ 1.02
CCHCR1-228ENST00000509552 MTMR6Q9Y217 621 aa21.42■■□□□ 1.02
CCHCR1-228ENST00000509552 FIBPO43427 364 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 ATP5JP18859 108 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 UBE3BQ7Z3V4 1068 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 CABLES1Q8TDN4 633 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 TMEM94Q12767 1356 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 COL18A1P39060 1754 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 DCCP43146 1447 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 PTPN12Q05209 780 aaKnown RBP21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 CHRNA2Q15822 529 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 TNNI3KQ59H18 835 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 TPCN1Q9ULQ1 816 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 FPGT-TNNI3KV9GXZ4 949 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 COL15A1P39059 1388 aa21.41■■□□□ 1.02
CCHCR1-228ENST00000509552 RFX5P48382 616 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 PIP4K2AP48426 406 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 RABL6Q3YEC7 729 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 A0A087WZG4 1122 aa21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 VPS37CA5D8V6 355 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 TFCP2Q12800 502 aa21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 NECAB1Q8N987 351 aa21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 JARID2Q92833 1246 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-228ENST00000509552 TNS3Q68CZ2 1445 aa21.39■■□□□ 1.02
CCHCR1-228ENST00000509552 PLBD2Q8NHP8 589 aa21.39■■□□□ 1.02
CCHCR1-228ENST00000509552 ALDH8A1Q9H2A2 487 aaPredicted RBP21.39■■□□□ 1.02
CCHCR1-228ENST00000509552 DBNLQ9UJU6 430 aaKnown RBP21.39■■□□□ 1.02
CCHCR1-228ENST00000509552 RPS6KB1P23443 525 aa21.39■■□□□ 1.01
CCHCR1-228ENST00000509552 MCM5P33992 734 aa21.39■■□□□ 1.01
CCHCR1-228ENST00000509552 PDCP20941 246 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 ST3GAL1Q11201 340 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 UVSSAQ2YD98 709 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 LARP1BQ659C4 914 aaKnown RBP21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 JCADQ9P266 1359 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 ATP5J2-PTCD1G3V325 749 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 PTCD1O75127 700 aaKnown RBP21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 DNM1Q05193 864 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms