RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 METTL22Q9BUU2 404 aaPredicted RBP14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 TRMT112Q9UI30 125 aaKnown RBP14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 PDE6BP35913 854 aa14.55□□□□□ -0.08
LIMCH1-210ENST00000509454 ALDH1L2Q3SY69 923 aa14.55□□□□□ -0.08
LIMCH1-210ENST00000509454 BRIP1Q9BX63 1249 aa14.55□□□□□ -0.08
LIMCH1-210ENST00000509454 NRXN2Q9P2S2 1712 aa14.55□□□□□ -0.08
LIMCH1-210ENST00000509454 N4BP2Q86UW6 1770 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-210ENST00000509454 ADCY9O60503 1353 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 SRCAPQ6ZRS2 3230 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 F6X3S4 739 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 H0YIN7 160 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 RTL5Q5HYW3 569 aaPredicted RBP14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 SLC4A10Q6U841 1118 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 DNAAF4Q8WXU2 420 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 ZNF622Q969S3 477 aaKnown RBP eCLIP14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 ISCA1Q9BUE6 129 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 KIF13BQ9NQT8 1826 aa14.54□□□□□ -0.08
LIMCH1-210ENST00000509454 PXDNLA1KZ92 1463 aa14.53□□□□□ -0.08
LIMCH1-210ENST00000509454 NTSR2O95665 410 aa14.53□□□□□ -0.08
LIMCH1-210ENST00000509454 CWC25Q9NXE8 425 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-210ENST00000509454 RARSP54136 660 aaKnown RBP14.52□□□□□ -0.08
LIMCH1-210ENST00000509454 BCS1LQ9Y276 419 aa14.52□□□□□ -0.08
LIMCH1-210ENST00000509454 SH3TC1Q8TE82 1336 aa14.52□□□□□ -0.08
LIMCH1-210ENST00000509454 ABCC12Q96J65 1359 aa14.52□□□□□ -0.08
LIMCH1-210ENST00000509454 IBTKQ9P2D0 1353 aaPredicted RBP14.52□□□□□ -0.08
LIMCH1-210ENST00000509454 CWF19L2Q2TBE0 894 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 CCDC191Q8NCU4 936 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 FAM89AQ96GI7 184 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 PIM2Q9P1W9 311 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 ANKRD31Q8N7Z5 1873 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 HCLS1P14317 486 aaPredicted RBP14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 SYNE4Q8N205 404 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 JARID2Q92833 1246 aaPredicted RBP14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 PDZRN3Q9UPQ7 1066 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 PTPRCP08575 1304 aa14.51□□□□□ -0.09
LIMCH1-210ENST00000509454 TRIM28Q13263 835 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 DALRD3Q5D0E6 543 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 RNF123Q5XPI4 1314 aa14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 RPGRQ92834 1020 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 FRAT1Q92837 279 aaPredicted RBP14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 NLRP3Q96P20 1036 aa14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 NOB1Q9ULX3 412 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-210ENST00000509454 NEURL1BA8MQ27 555 aa14.49□□□□□ -0.09
LIMCH1-210ENST00000509454 IGKV5-2P06315 115 aa14.49□□□□□ -0.09
LIMCH1-210ENST00000509454 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
LIMCH1-210ENST00000509454 KIF16BQ96L93 1317 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 IRS4O14654 1257 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 BCAR3O75815 825 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 TTLL6Q8N841 843 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 ZBTB38Q8NAP3 1195 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 LINS1Q8NG48 757 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 MASTLQ96GX5 879 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 KIAA1551Q9HCM1 1747 aa14.48□□□□□ -0.09
LIMCH1-210ENST00000509454 PCCAP05165 728 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 SRGNP10124 158 aa14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 HSP90B1P14625 803 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 NPR1P16066 1061 aa14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 YBX3P16989 372 aaKnown RBP eCLIP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 KCNA3P22001 575 aa14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 CNKSR1Q969H4 720 aa14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 API5Q9BZZ5 524 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 SRCIN1Q9C0H9 1055 aa14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 TNRC6CQ9HCJ0 1690 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 COL11A2P13942 1736 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-210ENST00000509454 IPO8O15397 1037 aaKnown RBP14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 GCKRQ14397 625 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 SLC10A5Q5PT55 438 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 BEND3Q5T5X7 828 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 STYK1Q6J9G0 422 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 C3orf67Q6ZVT6 689 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 UBE3BQ7Z3V4 1068 aa14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 RBM17Q96I25 401 aaKnown RBP14.46□□□□□ -0.09
LIMCH1-210ENST00000509454 GRIN3BO60391 1043 aa14.46□□□□□ -0.1
LIMCH1-210ENST00000509454 C9orf78Q9NZ63 289 aaPredicted RBP14.46□□□□□ -0.1
LIMCH1-210ENST00000509454 ARHGAP27Q6ZUM4 889 aa14.45□□□□□ -0.1
LIMCH1-210ENST00000509454 CACNA1SQ13698 1873 aa14.45□□□□□ -0.1
LIMCH1-210ENST00000509454 DLEC1Q9Y238 1755 aa14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 ALDH1L1O75891 902 aa14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 ALDH1B1P30837 517 aa14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 BRPF1P55201 1214 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 PRPF40BQ6NWY9 871 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 DDX46Q7L014 1031 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 CCDC85AQ96PX6 553 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 RIC1Q4ADV7 1423 aa14.44□□□□□ -0.1
LIMCH1-210ENST00000509454 KLRG2A4D1S0 409 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 C21orf2O43822 256 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 PDE8AO60658 829 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 CRY2Q49AN0 593 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 ZKSCAN2Q63HK3 967 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 CLUAP1Q96AJ1 413 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 RCAN3Q9UKA8 241 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 BRCA1P38398 1863 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 CDHR2Q9BYE9 1310 aa14.43□□□□□ -0.1
LIMCH1-210ENST00000509454 DDX60Q8IY21 1712 aaKnown RBP14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 H7C1W4 665 aa14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 CCT4P50991 539 aaKnown RBP14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 ARHGAP45Q92619 1136 aa14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 TMX4Q9H1E5 349 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 RNF39Q9H2S5 420 aa14.42□□□□□ -0.1
LIMCH1-210ENST00000509454 GRM8O00222 908 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms