RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-222	ENST00000508238	BRCA1	P38398	1863 aa	Known RBP	10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	SEMA3E	O15041	775 aa		10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	DCTN1	Q14203	1278 aa		10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	NFE2L2	Q16236	605 aa		10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	USP16	Q9Y5T5	823 aa		10.53	□□□□□ -0.72
UBE2D3-222	ENST00000508238	A1BG	P04217	495 aa		10.52	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PNISR	Q8TF01	805 aa	Known RBP	10.52	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PIM2	Q9P1W9	311 aa		10.52	□□□□□ -0.73
UBE2D3-222	ENST00000508238	DLG5	Q8TDM6	1919 aa		10.52	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ADCY9	O60503	1353 aa		10.52	□□□□□ -0.73
UBE2D3-222	ENST00000508238	AFDN	P55196	1824 aa	Known RBP	10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	NRXN2	Q9P2S2	1712 aa		10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	SERPINB2	P05120	415 aa		10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	WWC3	Q9ULE0	1092 aa		10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	TBC1D2B	Q9UPU7	963 aa		10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	BCS1L	Q9Y276	419 aa		10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.51	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ARFGEF1	Q9Y6D6	1849 aa		10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	CAMTA2	O94983	1202 aa		10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	MAP3K9	P80192	1104 aa		10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	DALRD3	Q5D0E6	543 aa	Known RBP	10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	CLEC4G	Q6UXB4	293 aa		10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	NPM2	Q86SE8	214 aa	Known RBP	10.5	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PRAMEF22	A3QJZ6	481 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	NBPF26	B4DH59	902 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PRKCSH	P14314	528 aa	Predicted RBP	10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	TBC1D9B	Q66K14	1250 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	NBPF10	Q6P3W6	841 aa	Known RBP	10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	NBPF15	Q8N660	670 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	BABAM1	Q9NWV8	329 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	MIS18A	Q9NYP9	233 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PDZRN3	Q9UPQ7	1066 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	MAPK8IP3	Q9UPT6	1336 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ATP10D	Q9P241	1426 aa		10.49	□□□□□ -0.73
UBE2D3-222	ENST00000508238	TESPA1	A2RU30	521 aa	Predicted RBP	10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	GIGYF1	O75420	1035 aa	Predicted RBP	10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	CHRNA5	P30532	468 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	C1QTNF8	P60827	252 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	EIF4A1	P60842	406 aa	Known RBP	10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	TPRN	Q4KMQ1	711 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ARHGAP27	Q6ZUM4	889 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	DZIP3	Q86Y13	1208 aa	Known RBP	10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	SLAIN1	Q8ND83	568 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	OXER1	Q8TDS5	423 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	SETDB2	Q96T68	719 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	BRIP1	Q9BX63	1249 aa		10.48	□□□□□ -0.73
UBE2D3-222	ENST00000508238	TMPO	P42166	694 aa	Known RBP	10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	RIPK4	P57078	832 aa		10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	BICDL1	Q6ZP65	573 aa		10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	CARMIL3	Q8ND23	1372 aa		10.47	□□□□□ -0.73
UBE2D3-222	ENST00000508238	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238		H0YIN7	160 aa		10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PDE6B	P35913	854 aa		10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ZEB1	P37275	1124 aa	Predicted RBP	10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	LMOD3	Q0VAK6	560 aa		10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	PRR5L	Q6MZQ0	368 aa		10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	THUMPD2	Q9BTF0	503 aa	Known RBP	10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	ZNF652	Q9Y2D9	606 aa		10.46	□□□□□ -0.73
UBE2D3-222	ENST00000508238	SCN7A	Q01118	1682 aa		10.46	□□□□□ -0.74
UBE2D3-222	ENST00000508238	KDM3B	Q7LBC6	1761 aa		10.46	□□□□□ -0.74
UBE2D3-222	ENST00000508238	SBF1	O95248	1867 aa		10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	TULP1	O00294	542 aa	Predicted RBP	10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	PIP4K2A	P48426	406 aa	Predicted RBP	10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	PDIA6	Q15084	440 aa		10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	C2CD5	Q86YS7	1000 aa		10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	TTLL6	Q8N841	843 aa		10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	RUNDC1	Q96C34	613 aa		10.45	□□□□□ -0.74
UBE2D3-222	ENST00000508238	DLEC1	Q9Y238	1755 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ERBB4	Q15303	1308 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ERVV-1	B6SEH8	477 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	CNBD1	Q8NA66	436 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ADAMTS8	Q9UP79	889 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ANKRD31	Q8N7Z5	1873 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	BCOR	Q6W2J9	1755 aa		10.44	□□□□□ -0.74
UBE2D3-222	ENST00000508238	KLRG2	A4D1S0	409 aa	Predicted RBP	10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	CHL1	O00533	1208 aa		10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	SLC34A2	O95436	690 aa		10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	MLLT3	P42568	568 aa	Predicted RBP	10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	WDR43	Q15061	677 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	C9orf131	Q5VYM1	1079 aa		10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	TPTE2	Q6XPS3	522 aa		10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	PTCD2	Q8WV60	388 aa	Known RBP	10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	TSPYL4	Q9UJ04	414 aa		10.43	□□□□□ -0.74
UBE2D3-222	ENST00000508238	LAMB4	A4D0S4	1761 aa		10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	TBC1D12	O60347	775 aa		10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	SRGN	P10124	158 aa		10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	ST5	P78524	1137 aa		10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	STYK1	Q6J9G0	422 aa		10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	NBPF5P	Q86XG9	351 aa	Predicted RBP	10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
UBE2D3-222	ENST00000508238	MAP3K15	Q6ZN16	1313 aa		10.41	□□□□□ -0.74
UBE2D3-222	ENST00000508238	HLF	Q16534	295 aa		10.41	□□□□□ -0.74
UBE2D3-222	ENST00000508238	SMYD5	Q6GMV2	418 aa		10.41	□□□□□ -0.74
UBE2D3-222	ENST00000508238	LRP10	Q7Z4F1	713 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms