RNA–Protein interactions for RNA: ENST00000507955.5

DDX41-208, Transcript of DEAD-box helicase 41, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX41, Length 2,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-208ENST00000507955 CHMP3Q9Y3E7 222 aa17.52■□□□□ 0.4
DDX41-208ENST00000507955 ZBTB3Q9H5J0 574 aa17.52■□□□□ 0.4
DDX41-208ENST00000507955 NSFL1CQ9UNZ2 370 aaKnown RBP17.52■□□□□ 0.4
DDX41-208ENST00000507955 TFCP2Q12800 502 aa17.51■□□□□ 0.39
DDX41-208ENST00000507955 RBM27Q9P2N5 1060 aaKnown RBP17.51■□□□□ 0.39
DDX41-208ENST00000507955 CASTP20810 708 aaKnown RBP17.51■□□□□ 0.39
DDX41-208ENST00000507955 AK2P54819 239 aa17.51■□□□□ 0.39
DDX41-208ENST00000507955 PTPN12Q05209 780 aaKnown RBP17.51■□□□□ 0.39
DDX41-208ENST00000507955 NMIQ13287 307 aaPredicted RBP17.51■□□□□ 0.39
DDX41-208ENST00000507955 CUL4AQ13619 759 aa17.51■□□□□ 0.39
DDX41-208ENST00000507955 CAVIN1Q6NZI2 390 aaKnown RBP17.51■□□□□ 0.39
DDX41-208ENST00000507955 GPATCH3Q96I76 525 aa17.51■□□□□ 0.39
DDX41-208ENST00000507955 TPRNQ4KMQ1 711 aa17.51■□□□□ 0.39
DDX41-208ENST00000507955 A0A0D9SFI3 127 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 PRKCSHP14314 528 aaPredicted RBP17.5■□□□□ 0.39
DDX41-208ENST00000507955 RFX5P48382 616 aaPredicted RBP17.5■□□□□ 0.39
DDX41-208ENST00000507955 HDAC5Q9UQL6 1122 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 TAF6LQ9Y6J9 622 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 LARGE1O95461 756 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 EVA1CP58658 441 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 LMBR1LQ6UX01 489 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 EVI5LQ96CN4 794 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 GDPD2Q9HCC8 539 aa17.5■□□□□ 0.39
DDX41-208ENST00000507955 KDM4FA0A1W2PPD8 638 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 KLHL40Q2TBA0 621 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 RUFY3Q7L099 469 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 GPT2Q8TD30 523 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 DBNLQ9UJU6 430 aaKnown RBP17.49■□□□□ 0.39
DDX41-208ENST00000507955 SOS2Q07890 1332 aaPredicted RBP17.49■□□□□ 0.39
DDX41-208ENST00000507955 PTMSP20962 102 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 MCM2P49736 904 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 FSD1Q9BTV5 496 aa17.49■□□□□ 0.39
DDX41-208ENST00000507955 PCDH11XQ9BZA7 1347 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 PCDH11YQ9BZA8 1340 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 ESPNB1AK53 854 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 IL2RBP14784 551 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 PLBD2Q8NHP8 589 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 TCEANC2Q96MN5 208 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 JAKMIP1Q96N16 626 aaKnown RBP17.48■□□□□ 0.39
DDX41-208ENST00000507955 TTC14Q96N46 770 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 LMTK3Q96Q04 1460 aa17.48■□□□□ 0.39
DDX41-208ENST00000507955 COL5A2P05997 1499 aaPredicted RBP17.47■□□□□ 0.39
DDX41-208ENST00000507955 MRC1P22897 1456 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 SLFNL1Q499Z3 407 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 ZNF589Q86UQ0 364 aaPredicted RBP17.47■□□□□ 0.39
DDX41-208ENST00000507955 PKD1L3Q7Z443 1732 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 BRD1O95696 1058 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 CASP7P55210 303 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 ZNF594Q96JF6 807 aaPredicted RBP17.47■□□□□ 0.39
DDX41-208ENST00000507955 DBNDD2Q9BQY9 259 aa17.47■□□□□ 0.39
DDX41-208ENST00000507955 KCNJ4P48050 445 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 IL17RAQ96F46 866 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 CCDC85AQ96PX6 553 aaPredicted RBP17.46■□□□□ 0.39
DDX41-208ENST00000507955 DNAJC2Q99543 621 aaKnown RBP17.46■□□□□ 0.39
DDX41-208ENST00000507955 RBM8AQ9Y5S9 174 aaKnown RBP17.46■□□□□ 0.39
DDX41-208ENST00000507955 TNNI3KQ59H18 835 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 RUFY2Q8WXA3 655 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 COPRSQ9NQ92 184 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 FPGT-TNNI3KV9GXZ4 949 aa17.46■□□□□ 0.39
DDX41-208ENST00000507955 CCDC171Q6TFL3 1326 aa17.45■□□□□ 0.38
DDX41-208ENST00000507955 SEC62Q99442 399 aaKnown RBP17.45■□□□□ 0.38
DDX41-208ENST00000507955 KAT6BQ8WYB5 2073 aa17.45■□□□□ 0.38
DDX41-208ENST00000507955 GLI3P10071 1580 aa17.45■□□□□ 0.38
DDX41-208ENST00000507955 AFDNP55196 1824 aaKnown RBP17.45■□□□□ 0.38
DDX41-208ENST00000507955 FOXO4P98177 505 aa17.45■□□□□ 0.38
DDX41-208ENST00000507955 NECTIN1Q15223 517 aa17.45■□□□□ 0.38
DDX41-208ENST00000507955 INTS4Q96HW7 963 aaKnown RBP17.44■□□□□ 0.38
DDX41-208ENST00000507955 ASAP1Q9ULH1 1129 aa17.44■□□□□ 0.38
DDX41-208ENST00000507955 STRCQ7RTU9 1775 aa17.44■□□□□ 0.38
DDX41-208ENST00000507955 TIMM10P62072 90 aa17.44■□□□□ 0.38
DDX41-208ENST00000507955 ZSCAN23Q3MJ62 389 aa17.44■□□□□ 0.38
DDX41-208ENST00000507955 RABL6Q3YEC7 729 aaPredicted RBP17.44■□□□□ 0.38
DDX41-208ENST00000507955 CCDC129Q6ZRS4 1044 aa17.44■□□□□ 0.38
DDX41-208ENST00000507955 NAP1L5Q96NT1 182 aaPredicted RBP17.44■□□□□ 0.38
DDX41-208ENST00000507955 ARFGEF2Q9Y6D5 1785 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 CREB3L3Q68CJ9 461 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 CCDC83Q8IWF9 413 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 NECAB1Q8N987 351 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 NEUROD6Q96NK8 337 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 CARD10Q9BWT7 1032 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 ERVV-2B6SEH9 535 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 NASPP49321 788 aaPredicted RBP17.43■□□□□ 0.38
DDX41-208ENST00000507955 DDX46Q7L014 1031 aaKnown RBP17.43■□□□□ 0.38
DDX41-208ENST00000507955 BTG4Q9NY30 223 aa17.43■□□□□ 0.38
DDX41-208ENST00000507955 LRRC24Q50LG9 513 aa17.42■□□□□ 0.38
DDX41-208ENST00000507955 PDRG1Q9NUG6 133 aa17.42■□□□□ 0.38
DDX41-208ENST00000507955 LIMCH1Q9UPQ0 1083 aa17.42■□□□□ 0.38
DDX41-208ENST00000507955 MAP4K1Q92918 833 aa17.42■□□□□ 0.38
DDX41-208ENST00000507955 TMEM63CQ9P1W3 806 aa17.42■□□□□ 0.38
DDX41-208ENST00000507955 H7C1W4 665 aa17.41■□□□□ 0.38
DDX41-208ENST00000507955 GADD45BO75293 160 aaPredicted RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 TRIM44Q96DX7 344 aaPredicted RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 PUS3Q9BZE2 481 aaKnown RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 CWC25Q9NXE8 425 aaPredicted RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 COL15A1P39059 1388 aa17.41■□□□□ 0.38
DDX41-208ENST00000507955 SLC27A2O14975 620 aa17.41■□□□□ 0.38
DDX41-208ENST00000507955 EPB41L2O43491 1005 aaKnown RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 SYNE4Q8N205 404 aa17.41■□□□□ 0.38
DDX41-208ENST00000507955 RPAP1Q9BWH6 1393 aaPredicted RBP17.41■□□□□ 0.38
DDX41-208ENST00000507955 ZNF445P59923 1031 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms