RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SNRPA1P09661 255 aaKnown RBP10.57□□□□□ -0.72
SCN1A-207ENST00000507401 DPEP1P16444 411 aa10.57□□□□□ -0.72
SCN1A-207ENST00000507401 KCNA3P22001 575 aa10.57□□□□□ -0.72
SCN1A-207ENST00000507401 PNISRQ8TF01 805 aaKnown RBP10.57□□□□□ -0.72
SCN1A-207ENST00000507401 SUPT16HQ9Y5B9 1047 aaKnown RBP10.57□□□□□ -0.72
SCN1A-207ENST00000507401 PXDNLA1KZ92 1463 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 NFIXQ14938 502 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 NFE2L2Q16236 605 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 NPM2Q86SE8 214 aaKnown RBP10.56□□□□□ -0.72
SCN1A-207ENST00000507401 CRISPLD2Q9H0B8 497 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 BCL2L12Q9HB09 334 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 PIM2Q9P1W9 311 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 USP16Q9Y5T5 823 aa10.56□□□□□ -0.72
SCN1A-207ENST00000507401 A1BGP04217 495 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 SERPINB2P05120 415 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 DSG2Q14126 1118 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 DCTN1Q14203 1278 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 BCS1LQ9Y276 419 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 KIAA1551Q9HCM1 1747 aa10.55□□□□□ -0.72
SCN1A-207ENST00000507401 MYBBP1AQ9BQG0 1328 aaKnown RBP10.55□□□□□ -0.72
SCN1A-207ENST00000507401 CLEC4GQ6UXB4 293 aa10.54□□□□□ -0.72
SCN1A-207ENST00000507401 PDZRN3Q9UPQ7 1066 aa10.54□□□□□ -0.72
SCN1A-207ENST00000507401 TBC1D2BQ9UPU7 963 aa10.54□□□□□ -0.72
SCN1A-207ENST00000507401 N4BP2Q86UW6 1770 aaPredicted RBP10.54□□□□□ -0.72
SCN1A-207ENST00000507401 MAPK8IP3Q9UPT6 1336 aa10.54□□□□□ -0.72
SCN1A-207ENST00000507401 DALRD3Q5D0E6 543 aaKnown RBP10.53□□□□□ -0.72
SCN1A-207ENST00000507401 TSHZ2Q9NRE2 1034 aa10.53□□□□□ -0.72
SCN1A-207ENST00000507401 BABAM1Q9NWV8 329 aa10.53□□□□□ -0.72
SCN1A-207ENST00000507401 VARS2Q5ST30 1063 aaKnown RBP10.52□□□□□ -0.73
SCN1A-207ENST00000507401 ARHGAP27Q6ZUM4 889 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 PLPP6Q8IY26 295 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 SETDB2Q96T68 719 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 BRIP1Q9BX63 1249 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 MIS18AQ9NYP9 233 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 WWC3Q9ULE0 1092 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 PCDHGA4Q9Y5G9 962 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 BRCA1P38398 1863 aaKnown RBP10.52□□□□□ -0.73
SCN1A-207ENST00000507401 DLG5Q8TDM6 1919 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 NRXN2Q9P2S2 1712 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 ADCY9O60503 1353 aa10.52□□□□□ -0.73
SCN1A-207ENST00000507401 PRAMEF22A3QJZ6 481 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 H0YIN7 160 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 GIGYF1O75420 1035 aaPredicted RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 CAMTA2O94983 1202 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 RIPK4P57078 832 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 C1QTNF8P60827 252 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 EIF4A1P60842 406 aaKnown RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 LMOD3Q0VAK6 560 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 TBC1D9BQ66K14 1250 aa10.51□□□□□ -0.73
SCN1A-207ENST00000507401 DZIP3Q86Y13 1208 aaKnown RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 PRKRIP1Q9H875 184 aaPredicted RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 ZNF330Q9Y3S2 320 aaPredicted RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 AFDNP55196 1824 aaKnown RBP10.51□□□□□ -0.73
SCN1A-207ENST00000507401 ARFGEF1Q9Y6D6 1849 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 NBPF26B4DH59 902 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 CHRNA5P30532 468 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 PDE6BP35913 854 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 TMPOP42166 694 aaKnown RBP10.5□□□□□ -0.73
SCN1A-207ENST00000507401 NBPF10Q6P3W6 841 aaKnown RBP10.5□□□□□ -0.73
SCN1A-207ENST00000507401 BICDL1Q6ZP65 573 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 NBPF15Q8N660 670 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 PTCD2Q8WV60 388 aaKnown RBP10.5□□□□□ -0.73
SCN1A-207ENST00000507401 GPBP1L1Q9HC44 474 aaPredicted RBP10.5□□□□□ -0.73
SCN1A-207ENST00000507401 ZNF652Q9Y2D9 606 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 CARMIL3Q8ND23 1372 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 ATP10DQ9P241 1426 aa10.5□□□□□ -0.73
SCN1A-207ENST00000507401 C2CD5Q86YS7 1000 aa10.49□□□□□ -0.73
SCN1A-207ENST00000507401 TTLL6Q8N841 843 aa10.49□□□□□ -0.73
SCN1A-207ENST00000507401 BBXQ8WY36 941 aaPredicted RBP10.49□□□□□ -0.73
SCN1A-207ENST00000507401 RUNDC1Q96C34 613 aa10.49□□□□□ -0.73
SCN1A-207ENST00000507401 YTHDC1Q96MU7 727 aaKnown RBP10.49□□□□□ -0.73
SCN1A-207ENST00000507401 KDM3BQ7LBC6 1761 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 ERVV-1B6SEH8 477 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 NUDT7P0C024 238 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 WDR43Q15061 677 aaKnown RBP eCLIP10.48□□□□□ -0.73
SCN1A-207ENST00000507401 PRR5LQ6MZQ0 368 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 TPTE2Q6XPS3 522 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 SPNS2Q8IVW8 549 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 THUMPD2Q9BTF0 503 aaKnown RBP10.48□□□□□ -0.73
SCN1A-207ENST00000507401 ADAMTS8Q9UP79 889 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 ERBB4Q15303 1308 aa10.48□□□□□ -0.73
SCN1A-207ENST00000507401 CNBD1Q8NA66 436 aa10.47□□□□□ -0.73
SCN1A-207ENST00000507401 TSPYL4Q9UJ04 414 aa10.47□□□□□ -0.73
SCN1A-207ENST00000507401 SCN7AQ01118 1682 aa10.47□□□□□ -0.73
SCN1A-207ENST00000507401 KLRG2A4D1S0 409 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-207ENST00000507401 PIP4K2AP48426 406 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-207ENST00000507401 ST5P78524 1137 aa10.46□□□□□ -0.73
SCN1A-207ENST00000507401 C9orf131Q5VYM1 1079 aa10.46□□□□□ -0.73
SCN1A-207ENST00000507401 ZNF687Q8N1G0 1237 aa10.46□□□□□ -0.73
SCN1A-207ENST00000507401 DLEC1Q9Y238 1755 aa10.45□□□□□ -0.74
SCN1A-207ENST00000507401 CHL1O00533 1208 aa10.45□□□□□ -0.74
SCN1A-207ENST00000507401 STYK1Q6J9G0 422 aa10.45□□□□□ -0.74
SCN1A-207ENST00000507401 NBPF5PQ86XG9 351 aaPredicted RBP10.45□□□□□ -0.74
SCN1A-207ENST00000507401 CNKSR1Q969H4 720 aa10.45□□□□□ -0.74
SCN1A-207ENST00000507401 NIP7Q9Y221 180 aaKnown RBP eCLIP10.45□□□□□ -0.74
SCN1A-207ENST00000507401 RRP7AQ9Y3A4 280 aaKnown RBP10.45□□□□□ -0.74
SCN1A-207ENST00000507401 LAMB4A4D0S4 1761 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 BCORQ6W2J9 1755 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 MAP3K15Q6ZN16 1313 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 ZC3H4Q9UPT8 1303 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms