RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 UTP14AQ9BVJ6 771 aaKnown RBP18.78■□□□□ 0.6
HMGCS1-203ENST00000507004 WDR90Q96KV7 1748 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 UBN2Q6ZU65 1347 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 NTSR2O95665 410 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 SLC10A5Q5PT55 438 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 PSMD1Q99460 953 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 LAS1LQ9Y4W2 734 aaKnown RBP18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 ABCC12Q96J65 1359 aa18.77■□□□□ 0.6
HMGCS1-203ENST00000507004 CACNA1SQ13698 1873 aa18.76■□□□□ 0.59
HMGCS1-203ENST00000507004 COPS6Q7L5N1 327 aa18.76■□□□□ 0.59
HMGCS1-203ENST00000507004 DBF4Q9UBU7 674 aaPredicted RBP18.76■□□□□ 0.59
HMGCS1-203ENST00000507004 HDGFL1Q5TGJ6 251 aa18.75■□□□□ 0.59
HMGCS1-203ENST00000507004 GNAI1P63096 354 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 TCIRG1Q13488 830 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 XAGE3Q8WTP9 111 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 JDP2Q8WYK2 163 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 L3MBTL3Q96JM7 780 aaPredicted RBP18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 IFT57Q9NWB7 429 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 HYPKQ9NX55 129 aa18.74■□□□□ 0.59
HMGCS1-203ENST00000507004 IARSP41252 1262 aaKnown RBP18.73■□□□□ 0.59
HMGCS1-203ENST00000507004 PROSER3Q2NL68 480 aa18.73■□□□□ 0.59
HMGCS1-203ENST00000507004 SYNE4Q8N205 404 aa18.73■□□□□ 0.59
HMGCS1-203ENST00000507004 VPS33BQ9H267 617 aa18.73■□□□□ 0.59
HMGCS1-203ENST00000507004 AIMP1Q12904 312 aaKnown RBP18.72■□□□□ 0.59
HMGCS1-203ENST00000507004 PLBD2Q8NHP8 589 aa18.72■□□□□ 0.59
HMGCS1-203ENST00000507004 SH3TC1Q8TE82 1336 aa18.72■□□□□ 0.59
HMGCS1-203ENST00000507004 POTECB2RU33 542 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 APAF1O14727 1248 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 DDNO94850 711 aaPredicted RBP18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 ANXA1P04083 346 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 NLRP10Q86W26 655 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 DNAJC5GQ8N7S2 189 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 ZNF277Q9NRM2 450 aaPredicted RBP18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 CHPF2Q9P2E5 772 aa18.71■□□□□ 0.59
HMGCS1-203ENST00000507004 PPEF1O14829 653 aaPredicted RBP18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 BBOX1O75936 387 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 ZNF853P0CG23 659 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 HSP90B1P14625 803 aaKnown RBP18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 DUSP27Q5VZP5 1158 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 ANKRD13DQ6ZTN6 518 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 TMC4Q7Z404 712 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 SUPT20HQ8NEM7 779 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 NECTIN2Q92692 538 aa18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 TRMT112Q9UI30 125 aaKnown RBP18.7■□□□□ 0.58
HMGCS1-203ENST00000507004 ANKRD36CQ5JPF3 1778 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 FZD9O00144 591 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 EIF6P56537 245 aaKnown RBP18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 NCBP3Q53F19 620 aaKnown RBP18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 CHADLQ6NUI6 762 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 KLRG1Q96E93 195 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 MBIPQ9NS73 344 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 SCN4AP35499 1836 aa18.69■□□□□ 0.58
HMGCS1-203ENST00000507004 SNED1Q8TER0 1413 aa18.68■□□□□ 0.58
HMGCS1-203ENST00000507004 KRT24Q2M2I5 525 aa18.68■□□□□ 0.58
HMGCS1-203ENST00000507004 LDHDQ86WU2 507 aa18.68■□□□□ 0.58
HMGCS1-203ENST00000507004 GPC2Q8N158 579 aa18.68■□□□□ 0.58
HMGCS1-203ENST00000507004 ATP6V0A2Q9Y487 856 aa18.68■□□□□ 0.58
HMGCS1-203ENST00000507004 TRIM28Q13263 835 aaKnown RBP18.67■□□□□ 0.58
HMGCS1-203ENST00000507004 DDX46Q7L014 1031 aaKnown RBP18.67■□□□□ 0.58
HMGCS1-203ENST00000507004 PNMA8AQ86V59 439 aaPredicted RBP18.67■□□□□ 0.58
HMGCS1-203ENST00000507004 HACL1Q9UJ83 578 aa18.67■□□□□ 0.58
HMGCS1-203ENST00000507004 GOLGA2Q08379 1002 aa18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 CCDC27Q2M243 656 aa18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 OLFM4Q6UX06 510 aa18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 LARGE2Q8N3Y3 721 aa18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 JMYQ8N9B5 988 aa18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 TAF1DQ9H5J8 278 aaPredicted RBP18.66■□□□□ 0.58
HMGCS1-203ENST00000507004 SP8Q8IXZ3 490 aa18.65■□□□□ 0.58
HMGCS1-203ENST00000507004 ISCA1Q9BUE6 129 aa18.65■□□□□ 0.58
HMGCS1-203ENST00000507004 GRAPQ13588 217 aa18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 CCDC30Q5VVM6 783 aa18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 NIM1KQ8IY84 436 aa18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 GRAPLQ8TC17 118 aaPredicted RBP18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 ABCC4O15439 1325 aa18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 ZNF541Q9H0D2 1346 aa18.64■□□□□ 0.57
HMGCS1-203ENST00000507004 DDX58O95786 925 aaKnown RBP18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 LMOD1P29536 600 aaPredicted RBP18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 C3orf67Q6ZVT6 689 aa18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 RIC3Q7Z5B4 369 aa18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 RTFDC1Q9BY42 306 aaPredicted RBP18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 CEP350Q5VT06 3117 aa18.63■□□□□ 0.57
HMGCS1-203ENST00000507004 ANP32CO43423 234 aa18.62■□□□□ 0.57
HMGCS1-203ENST00000507004 HCLS1P14317 486 aaPredicted RBP18.62■□□□□ 0.57
HMGCS1-203ENST00000507004 EPHX2P34913 555 aa18.62■□□□□ 0.57
HMGCS1-203ENST00000507004 SF3B3Q15393 1217 aaKnown RBP18.62■□□□□ 0.57
HMGCS1-203ENST00000507004 CREBZFQ9NS37 354 aa18.62■□□□□ 0.57
HMGCS1-203ENST00000507004 PPIP5K2O43314 1243 aa18.61■□□□□ 0.57
HMGCS1-203ENST00000507004 DPP8Q6V1X1 898 aaPredicted RBP18.61■□□□□ 0.57
HMGCS1-203ENST00000507004 MPNDQ8N594 471 aa18.61■□□□□ 0.57
HMGCS1-203ENST00000507004 IL16Q14005 1332 aa18.6■□□□□ 0.57
HMGCS1-203ENST00000507004 ZNF316A6NFI3 1004 aaPredicted RBP18.6■□□□□ 0.57
HMGCS1-203ENST00000507004 TCERG1O14776 1098 aaKnown RBP18.59■□□□□ 0.57
HMGCS1-203ENST00000507004 EAPPQ56P03 285 aaPredicted RBP18.59■□□□□ 0.57
HMGCS1-203ENST00000507004 ZBTB38Q8NAP3 1195 aaPredicted RBP18.59■□□□□ 0.57
HMGCS1-203ENST00000507004 CCDC191Q8NCU4 936 aa18.59■□□□□ 0.57
HMGCS1-203ENST00000507004 ZNRF3Q9ULT6 936 aa18.59■□□□□ 0.57
HMGCS1-203ENST00000507004 ATP5J2-PTCD1G3V325 749 aa18.58■□□□□ 0.56
HMGCS1-203ENST00000507004 HTRA3P83110 453 aa18.58■□□□□ 0.56
HMGCS1-203ENST00000507004 STK31Q9BXU1 1019 aa18.58■□□□□ 0.56
HMGCS1-203ENST00000507004 CLEC11AQ9Y240 323 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms