RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 CCDC88AQ3V6T2 1871 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 IQCA1LA6NCM1 817 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 DDNO94850 711 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-209ENST00000506630 ST5P78524 1137 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 WDR63Q8IWG1 891 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 ZBTB3Q9H5J0 574 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 CHPF2Q9P2E5 772 aa16.95■□□□□ 0.3
TCOF1-209ENST00000506630 STYK1Q6J9G0 422 aa16.94■□□□□ 0.3
TCOF1-209ENST00000506630 LRP10Q7Z4F1 713 aa16.94■□□□□ 0.3
TCOF1-209ENST00000506630 C8orf58Q8NAV2 365 aa16.94■□□□□ 0.3
TCOF1-209ENST00000506630 DDX21Q9NR30 783 aaKnown RBP eCLIP16.94■□□□□ 0.3
TCOF1-209ENST00000506630 NIP7Q9Y221 180 aaKnown RBP eCLIP16.94■□□□□ 0.3
TCOF1-209ENST00000506630 FANCIQ9NVI1 1328 aa16.94■□□□□ 0.3
TCOF1-209ENST00000506630 ERVV-1B6SEH8 477 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 RGL2O15211 777 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 POTEIP0CG38 1075 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 POTEJP0CG39 1038 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 AIMP1Q12904 312 aaKnown RBP16.93■□□□□ 0.3
TCOF1-209ENST00000506630 PRPF40BQ6NWY9 871 aaKnown RBP16.93■□□□□ 0.3
TCOF1-209ENST00000506630 XAGE3Q8WTP9 111 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 MASTLQ96GX5 879 aa16.93■□□□□ 0.3
TCOF1-209ENST00000506630 SLX4Q8IY92 1834 aa16.92■□□□□ 0.3
TCOF1-209ENST00000506630 SRGNP10124 158 aa16.92■□□□□ 0.3
TCOF1-209ENST00000506630 LDHDQ86WU2 507 aa16.92■□□□□ 0.3
TCOF1-209ENST00000506630 DBF4Q9UBU7 674 aaPredicted RBP16.92■□□□□ 0.3
TCOF1-209ENST00000506630 FAM177BA6PVY3 158 aa16.91■□□□□ 0.3
TCOF1-209ENST00000506630 COPS6Q7L5N1 327 aa16.91■□□□□ 0.3
TCOF1-209ENST00000506630 NBPF5PQ86XG9 351 aaPredicted RBP16.91■□□□□ 0.3
TCOF1-209ENST00000506630 TSPYL6Q8N831 410 aa16.91■□□□□ 0.3
TCOF1-209ENST00000506630 AIDAQ96BJ3 306 aa16.91■□□□□ 0.3
TCOF1-209ENST00000506630 PCNTO95613 3336 aa16.91■□□□□ 0.3
TCOF1-209ENST00000506630 CNTNAP1P78357 1384 aa16.9■□□□□ 0.3
TCOF1-209ENST00000506630 FOXN1O15353 648 aa16.9■□□□□ 0.3
TCOF1-209ENST00000506630 GPTP24298 496 aa16.9■□□□□ 0.3
TCOF1-209ENST00000506630 TWISTNBQ3B726 338 aaPredicted RBP16.9■□□□□ 0.3
TCOF1-209ENST00000506630 GIGYF2Q6Y7W6 1299 aaKnown RBP16.9■□□□□ 0.3
TCOF1-209ENST00000506630 PRDM10Q9NQV6 1147 aa16.9■□□□□ 0.3
TCOF1-209ENST00000506630 CTCFP49711 727 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-209ENST00000506630 CCDC93Q567U6 631 aa16.89■□□□□ 0.29
TCOF1-209ENST00000506630 L3MBTL3Q96JM7 780 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-209ENST00000506630 TAF1DQ9H5J8 278 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-209ENST00000506630 MYH16Q9H6N6 1097 aa16.89■□□□□ 0.29
TCOF1-209ENST00000506630 SPINK5Q9NQ38 1064 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-209ENST00000506630 HYPKQ9NX55 129 aa16.89■□□□□ 0.29
TCOF1-209ENST00000506630 PASKQ96RG2 1323 aa16.89■□□□□ 0.29
TCOF1-209ENST00000506630 FER1L6Q2WGJ9 1857 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 TMEM88BA6NKF7 163 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 GOLGA2Q08379 1002 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 EAPPQ56P03 285 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-209ENST00000506630 CCDC30Q5VVM6 783 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 SLC51AQ86UW1 340 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 CHMP4AQ9BY43 222 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 CLEC11AQ9Y240 323 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 ZNF521Q96K83 1311 aa16.88■□□□□ 0.29
TCOF1-209ENST00000506630 LAMB2P55268 1798 aa16.87■□□□□ 0.29
TCOF1-209ENST00000506630 NPR1P16066 1061 aa16.87■□□□□ 0.29
TCOF1-209ENST00000506630 OLFM4Q6UX06 510 aa16.87■□□□□ 0.29
TCOF1-209ENST00000506630 HACL1Q9UJ83 578 aa16.87■□□□□ 0.29
TCOF1-209ENST00000506630 DICER1Q9UPY3 1922 aaKnown RBP16.87■□□□□ 0.29
TCOF1-209ENST00000506630 UBN2Q6ZU65 1347 aa16.87■□□□□ 0.29
TCOF1-209ENST00000506630 GTF2E1P29083 439 aaPredicted RBP16.86■□□□□ 0.29
TCOF1-209ENST00000506630 VEGFBP49765 207 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 EXOSC9Q06265 439 aaKnown RBP16.86■□□□□ 0.29
TCOF1-209ENST00000506630 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 TPTE2Q6XPS3 522 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 C7orf43Q8WVR3 580 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 STK31Q9BXU1 1019 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 NYXQ9GZU5 481 aa16.86■□□□□ 0.29
TCOF1-209ENST00000506630 PHAXQ9H814 394 aaKnown RBP16.86■□□□□ 0.29
TCOF1-209ENST00000506630 TCERG1O14776 1098 aaKnown RBP16.85■□□□□ 0.29
TCOF1-209ENST00000506630 ITGBL1O95965 494 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-209ENST00000506630 FKBP4Q02790 459 aaKnown RBP eCLIP16.85■□□□□ 0.29
TCOF1-209ENST00000506630 PNMA8AQ86V59 439 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-209ENST00000506630 NUTM1Q86Y26 1132 aa16.85■□□□□ 0.29
TCOF1-209ENST00000506630 ZNF34Q8IZ26 560 aa16.85■□□□□ 0.29
TCOF1-209ENST00000506630 PLBD2Q8NHP8 589 aa16.85■□□□□ 0.29
TCOF1-209ENST00000506630 IBTKQ9P2D0 1353 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-209ENST00000506630 EPHX2P34913 555 aa16.84■□□□□ 0.29
TCOF1-209ENST00000506630 PARP10Q53GL7 1025 aa16.84■□□□□ 0.29
TCOF1-209ENST00000506630 ANKRD13DQ6ZTN6 518 aa16.84■□□□□ 0.29
TCOF1-209ENST00000506630 RTKN2Q8IZC4 609 aa16.84■□□□□ 0.29
TCOF1-209ENST00000506630 ABCC12Q96J65 1359 aa16.84■□□□□ 0.29
TCOF1-209ENST00000506630 KLRG2A4D1S0 409 aaPredicted RBP16.83■□□□□ 0.28
TCOF1-209ENST00000506630 SUSD4Q5VX71 490 aa16.83■□□□□ 0.28
TCOF1-209ENST00000506630 PPP1R42Q7Z4L9 355 aa16.83■□□□□ 0.28
TCOF1-209ENST00000506630 RIC3Q7Z5B4 369 aa16.83■□□□□ 0.28
TCOF1-209ENST00000506630 DDX60Q8IY21 1712 aaKnown RBP16.83■□□□□ 0.28
TCOF1-209ENST00000506630 ZNF277Q9NRM2 450 aaPredicted RBP16.83■□□□□ 0.28
TCOF1-209ENST00000506630 WBP1LQ9NX94 342 aa16.83■□□□□ 0.28
TCOF1-209ENST00000506630 ZNF541Q9H0D2 1346 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 E9PSI1 815 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 VAMP4O75379 141 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 ALDH1B1P30837 517 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 LBX1P52954 281 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 TCIRG1Q13488 830 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 DEFB115Q30KQ5 88 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 ZNF428Q96B54 188 aa16.82■□□□□ 0.28
TCOF1-209ENST00000506630 NTSR2O95665 410 aa16.81■□□□□ 0.28
TCOF1-209ENST00000506630 DDX58O95786 925 aaKnown RBP16.81■□□□□ 0.28
TCOF1-209ENST00000506630 C3orf67Q6ZVT6 689 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms