RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SLC39A6Q13433 755 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 ANKRD13DQ6ZTN6 518 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 AACSQ86V21 672 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 BICC1Q9H694 974 aaKnown RBP14.48□□□□□ -0.09
NUP54-202ENST00000502850 PRDM11Q9NQV5 511 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 IGKV5-2P06315 115 aa14.47□□□□□ -0.09
NUP54-202ENST00000502850 MYL6BP14649 208 aa14.47□□□□□ -0.09
NUP54-202ENST00000502850 CHRNA2Q15822 529 aa14.47□□□□□ -0.09
NUP54-202ENST00000502850 COPS6Q7L5N1 327 aa14.47□□□□□ -0.09
NUP54-202ENST00000502850 PALD1Q9ULE6 856 aa14.47□□□□□ -0.09
NUP54-202ENST00000502850 COL5A2P05997 1499 aaPredicted RBP14.47□□□□□ -0.09
NUP54-202ENST00000502850 NUP188Q5SRE5 1749 aa14.46□□□□□ -0.09
NUP54-202ENST00000502850 ERVV-2B6SEH9 535 aa14.46□□□□□ -0.09
NUP54-202ENST00000502850 MYD88Q99836 296 aa14.46□□□□□ -0.09
NUP54-202ENST00000502850 LSG1Q9H089 658 aaKnown RBP14.46□□□□□ -0.09
NUP54-202ENST00000502850 DDX49Q9Y6V7 483 aaKnown RBP14.46□□□□□ -0.09
NUP54-202ENST00000502850 RFX7Q2KHR2 1363 aa14.46□□□□□ -0.1
NUP54-202ENST00000502850 GRPEL1Q9HAV7 217 aa14.45□□□□□ -0.1
NUP54-202ENST00000502850 MCTP1Q6DN14 999 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 LRP10Q7Z4F1 713 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 FAM43AQ8N2R8 423 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 ZGPATQ8N5A5 531 aaKnown RBP14.44□□□□□ -0.1
NUP54-202ENST00000502850 PLBD2Q8NHP8 589 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 ZCRB1Q8TBF4 217 aaKnown RBP14.44□□□□□ -0.1
NUP54-202ENST00000502850 KAZALD1Q96I82 304 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 COPRSQ9NQ92 184 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 SHANK3Q9BYB0 1731 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 A0A0G2JS52 829 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 MAP4K4O95819 1239 aaPredicted RBP14.44□□□□□ -0.1
NUP54-202ENST00000502850 XRCC6P12956 609 aaKnown RBP eCLIP14.44□□□□□ -0.1
NUP54-202ENST00000502850 CWC27Q6UX04 472 aaKnown RBP14.44□□□□□ -0.1
NUP54-202ENST00000502850 TOM1L2Q6ZVM7 507 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 CARD10Q9BWT7 1032 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 TM6SF1Q9BZW5 370 aa14.44□□□□□ -0.1
NUP54-202ENST00000502850 PA2G4Q9UQ80 394 aaKnown RBP14.44□□□□□ -0.1
NUP54-202ENST00000502850 SASH1O94885 1247 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 MBD3O95983 291 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 NKX1-1Q15270 411 aaPredicted RBP14.43□□□□□ -0.1
NUP54-202ENST00000502850 FAM98CQ17RN3 349 aaKnown RBP14.43□□□□□ -0.1
NUP54-202ENST00000502850 RABL6Q3YEC7 729 aaPredicted RBP14.43□□□□□ -0.1
NUP54-202ENST00000502850 KRT27Q7Z3Y8 459 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 SNRKQ9NRH2 765 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 SNX14Q9Y5W7 946 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 SPATA31A5Q5VU36 1347 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 SPATA31A7Q8IWB4 1347 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 KCPQ6ZWJ8 1503 aa14.43□□□□□ -0.1
NUP54-202ENST00000502850 BRD1O95696 1058 aa14.42□□□□□ -0.1
NUP54-202ENST00000502850 ZKSCAN1P17029 563 aaPredicted RBP14.42□□□□□ -0.1
NUP54-202ENST00000502850 TICAM2Q86XR7 235 aa14.42□□□□□ -0.1
NUP54-202ENST00000502850 KCNB2Q92953 911 aa14.42□□□□□ -0.1
NUP54-202ENST00000502850 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.42□□□□□ -0.1
NUP54-202ENST00000502850 WDR33Q9C0J8 1336 aaKnown RBP14.42□□□□□ -0.1
NUP54-202ENST00000502850 PDIA4P13667 645 aaKnown RBP14.41□□□□□ -0.1
NUP54-202ENST00000502850 IL2RBP14784 551 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 USP16Q9Y5T5 823 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 CCDC171Q6TFL3 1326 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 TNS2Q63HR2 1409 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 TJP1Q07157 1748 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 RNF20Q5VTR2 975 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 EAF2Q96CJ1 260 aaPredicted RBP14.41□□□□□ -0.1
NUP54-202ENST00000502850 ZSCAN31Q96LW9 406 aaPredicted RBP14.41□□□□□ -0.1
NUP54-202ENST00000502850 UPF3BQ9BZI7 483 aaKnown RBP14.41□□□□□ -0.1
NUP54-202ENST00000502850 IL25Q9H293 177 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 LMBRD1Q9NUN5 540 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 LIMCH1Q9UPQ0 1083 aa14.41□□□□□ -0.1
NUP54-202ENST00000502850 EP400Q96L91 3159 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 PSMA5P28066 241 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 EVA1CP58658 441 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 ZNF445P59923 1031 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 VPS53Q5VIR6 699 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 ANP32BQ92688 251 aaKnown RBP14.4□□□□□ -0.1
NUP54-202ENST00000502850 TTC14Q96N46 770 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 SH2B1Q9NRF2 756 aaPredicted RBP14.4□□□□□ -0.1
NUP54-202ENST00000502850 STRN4Q9NRL3 753 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 ZDHHC9Q9Y397 364 aa14.4□□□□□ -0.1
NUP54-202ENST00000502850 A0A087WZG4 1122 aa14.39□□□□□ -0.11
NUP54-202ENST00000502850 SF3B2Q13435 895 aaKnown RBP14.39□□□□□ -0.11
NUP54-202ENST00000502850 PKP1Q13835 747 aa14.39□□□□□ -0.11
NUP54-202ENST00000502850 FSD1Q9BTV5 496 aa14.39□□□□□ -0.11
NUP54-202ENST00000502850 CYP46A1Q9Y6A2 500 aa14.39□□□□□ -0.11
NUP54-202ENST00000502850 SPEF2Q9C093 1822 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 SPATA31A1Q5TZJ5 1347 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 ATP5JP18859 108 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 KCNJ4P48050 445 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 RFX5P48382 616 aaPredicted RBP14.38□□□□□ -0.11
NUP54-202ENST00000502850 UBE3BQ7Z3V4 1068 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 SYAP1Q96A49 352 aaPredicted RBP14.38□□□□□ -0.11
NUP54-202ENST00000502850 SIL1Q9H173 461 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 CWC25Q9NXE8 425 aaPredicted RBP14.38□□□□□ -0.11
NUP54-202ENST00000502850 HMG20BQ9P0W2 317 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 ATP6V1DQ9Y5K8 247 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 MED23Q9ULK4 1368 aa14.38□□□□□ -0.11
NUP54-202ENST00000502850 TNNI3KQ59H18 835 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 CCDC8Q9H0W5 538 aaPredicted RBP14.37□□□□□ -0.11
NUP54-202ENST00000502850 FPGT-TNNI3KV9GXZ4 949 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 NCLP19338 710 aaKnown RBP14.37□□□□□ -0.11
NUP54-202ENST00000502850 CASTP20810 708 aaKnown RBP14.37□□□□□ -0.11
NUP54-202ENST00000502850 AK2P54819 239 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 PTPN12Q05209 780 aaKnown RBP14.37□□□□□ -0.11
NUP54-202ENST00000502850 ANKRD1Q15327 319 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms