RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FSD1Q9BTV5 496 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-215ENST00000497106 IL1RAPL2Q9NP60 686 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 METTL24Q5JXM2 366 aa10.15□□□□□ -0.79
USP54-215ENST00000497106 MARCH10Q8NA82 808 aaPredicted RBP10.15□□□□□ -0.79
USP54-215ENST00000497106 ZBTB38Q8NAP3 1195 aaPredicted RBP10.15□□□□□ -0.79
USP54-215ENST00000497106 TBC1D2BQ9UPU7 963 aa10.15□□□□□ -0.79
USP54-215ENST00000497106 IRS4O14654 1257 aaPredicted RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 NBPF7P0C2Y1 421 aaPredicted RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 CYP19A1P11511 503 aaPredicted RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 TRIM28Q13263 835 aaKnown RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 ZKSCAN1P17029 563 aaPredicted RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 PIP4K2AP48426 406 aaPredicted RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 PDE1AP54750 535 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 RC3H1Q5TC82 1133 aaKnown RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 EVI5LQ96CN4 794 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 PRAMEF22A3QJZ6 481 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 GNPATO15228 680 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 ST5P78524 1137 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 SLC27A3Q5K4L6 730 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 CLEC4GQ6UXB4 293 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 TPTE2Q6XPS3 522 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 VPS37DQ86XT2 251 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 COL18A1P39060 1754 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 IFIT1P09914 478 aaKnown RBP10.14□□□□□ -0.79
USP54-215ENST00000497106 SLC5A1P13866 664 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 TTLL7Q6ZT98 887 aa10.14□□□□□ -0.79
USP54-215ENST00000497106 SMARCA5O60264 1052 aaPredicted RBP10.13□□□□□ -0.79
USP54-215ENST00000497106 ADRA2BP18089 450 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 POLA2Q14181 598 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 NBPF5PQ86XG9 351 aaPredicted RBP10.13□□□□□ -0.79
USP54-215ENST00000497106 BCL11BQ9C0K0 894 aaPredicted RBP10.13□□□□□ -0.79
USP54-215ENST00000497106 PKD1L3Q7Z443 1732 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 ZBTB1Q9Y2K1 713 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 FAM177BA6PVY3 158 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 FRAT2O75474 233 aaPredicted RBP10.13□□□□□ -0.79
USP54-215ENST00000497106 UTYO14607 1347 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 CDHR2Q9BYE9 1310 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 RABEP1Q15276 862 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 PLEKHM2Q8IWE5 1019 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 ANO2Q9NQ90 1003 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 COPRSQ9NQ92 184 aa10.13□□□□□ -0.79
USP54-215ENST00000497106 NUTM1Q86Y26 1132 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 LRP6O75581 1613 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 EYA2O00167 538 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 UQCRFS1P1P0C7P4 283 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 LDHAL6AQ6ZMR3 332 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 CNTNAP4Q9C0A0 1308 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 H7C1W4 665 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 CIAO1O76071 339 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 MCM2P49736 904 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 PKNOX2Q96KN3 472 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 NLRP3Q96P20 1036 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 GPR108Q9NPR9 543 aa10.12□□□□□ -0.79
USP54-215ENST00000497106 PNMA6EA0A0J9YXQ4 647 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 GOLGA6L22H0YM25 854 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 EPB41L2O43491 1005 aaKnown RBP10.11□□□□□ -0.79
USP54-215ENST00000497106 RPS6KA4O75676 772 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 FGD1P98174 961 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 PDIA6Q15084 440 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 PODXL2Q9NZ53 605 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 BICDL1Q6ZP65 573 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 ISCA1Q9BUE6 129 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 TTF1Q15361 905 aaPredicted RBP10.11□□□□□ -0.79
USP54-215ENST00000497106 DDX46Q7L014 1031 aaKnown RBP10.11□□□□□ -0.79
USP54-215ENST00000497106 G3V3G9 751 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 PTMSP20962 102 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 PSMA5P28066 241 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 DCAF8Q5TAQ9 597 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 TICAM2Q86XR7 235 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 OSBPL3Q9H4L5 887 aa10.11□□□□□ -0.79
USP54-215ENST00000497106 NWD2Q9ULI1 1742 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 ANKRD18AQ8IVF6 992 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 NOL10Q9BSC4 688 aaKnown RBP10.1□□□□□ -0.79
USP54-215ENST00000497106 CACNA1FO60840 1977 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 KDM3BQ7LBC6 1761 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 COL15A1P39059 1388 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 DNAJC2Q99543 621 aaKnown RBP10.1□□□□□ -0.79
USP54-215ENST00000497106 ABCA3Q99758 1704 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 NBPF26B4DH59 902 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 CTSWP56202 376 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 NBPF14Q5TI25 921 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 NBPF10Q6P3W6 841 aaKnown RBP10.1□□□□□ -0.79
USP54-215ENST00000497106 NBPF15Q8N660 670 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 RPGRQ92834 1020 aaKnown RBP10.1□□□□□ -0.79
USP54-215ENST00000497106 RAD50Q92878 1312 aa10.1□□□□□ -0.79
USP54-215ENST00000497106 IGKV5-2P06315 115 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 C8orf34Q49A92 452 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 PLA2G12BQ9BX93 195 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 ANKRD2Q9GZV1 360 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 STAP2Q9UGK3 403 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 CAVIN4Q5BKX8 364 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 NLRP10Q86W26 655 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 MROH5Q6ZUA9 1318 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 RGPD2P0DJD1 1756 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 RGPD5Q99666 1765 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 CRYBG1Q9Y4K1 1723 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 ZFYP08048 801 aaPredicted RBP10.09□□□□□ -0.79
USP54-215ENST00000497106 ATP2B3Q16720 1220 aa10.09□□□□□ -0.79
USP54-215ENST00000497106 TBC1D9Q6ZT07 1266 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms