RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 GNAI1P63096 354 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 TCIRG1Q13488 830 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 CC2D2BQ6DHV5 1058 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 CRAMP1Q96RY5 1269 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 MBIPQ9NS73 344 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 IFT57Q9NWB7 429 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 CHPF2Q9P2E5 772 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 DBF4Q9UBU7 674 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-214ENST00000496043 ABCC12Q96J65 1359 aa16.55■□□□□ 0.24
PTPRF-214ENST00000496043 SYNE4Q8N205 404 aa16.55■□□□□ 0.24
PTPRF-214ENST00000496043 SMC1BQ8NDV3 1235 aa16.55■□□□□ 0.24
PTPRF-214ENST00000496043 NUP98P52948 1817 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 COL11A2P13942 1736 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-214ENST00000496043 GRIPAP1Q4V328 841 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 OLFM4Q6UX06 510 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 ANKRD13DQ6ZTN6 518 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 NLRP10Q86W26 655 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 ZNF277Q9NRM2 450 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-214ENST00000496043 HYPKQ9NX55 129 aa16.54■□□□□ 0.24
PTPRF-214ENST00000496043 RNF123Q5XPI4 1314 aa16.53■□□□□ 0.24
PTPRF-214ENST00000496043 POTECB2RU33 542 aa16.53■□□□□ 0.24
PTPRF-214ENST00000496043 CCDC184Q52MB2 194 aa16.53■□□□□ 0.24
PTPRF-214ENST00000496043 PLBD2Q8NHP8 589 aa16.53■□□□□ 0.24
PTPRF-214ENST00000496043 CHMP4AQ9BY43 222 aa16.53■□□□□ 0.24
PTPRF-214ENST00000496043 TMX4Q9H1E5 349 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-214ENST00000496043 TRMT112Q9UI30 125 aaKnown RBP16.53■□□□□ 0.24
PTPRF-214ENST00000496043 ANP32CO43423 234 aa16.52■□□□□ 0.24
PTPRF-214ENST00000496043 DDNO94850 711 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-214ENST00000496043 PSMD1Q99460 953 aa16.52■□□□□ 0.24
PTPRF-214ENST00000496043 FER1L6Q2WGJ9 1857 aa16.52■□□□□ 0.23
PTPRF-214ENST00000496043 RIC1Q4ADV7 1423 aa16.52■□□□□ 0.23
PTPRF-214ENST00000496043 CCDC88AQ3V6T2 1871 aa16.51■□□□□ 0.23
PTPRF-214ENST00000496043 ELL2O00472 640 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-214ENST00000496043 IARSP41252 1262 aaKnown RBP16.51■□□□□ 0.23
PTPRF-214ENST00000496043 C3orf67Q6ZVT6 689 aa16.51■□□□□ 0.23
PTPRF-214ENST00000496043 TCERG1O14776 1098 aaKnown RBP16.5■□□□□ 0.23
PTPRF-214ENST00000496043 PPEF1O14829 653 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-214ENST00000496043 BBOX1O75936 387 aa16.5■□□□□ 0.23
PTPRF-214ENST00000496043 HCLS1P14317 486 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-214ENST00000496043 SH3TC1Q8TE82 1336 aa16.49■□□□□ 0.23
PTPRF-214ENST00000496043 DNAJC5GQ8N7S2 189 aa16.49■□□□□ 0.23
PTPRF-214ENST00000496043 JDP2Q8WYK2 163 aa16.49■□□□□ 0.23
PTPRF-214ENST00000496043 IQCA1LA6NCM1 817 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 CCDC27Q2M243 656 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 RIC3Q7Z5B4 369 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 C8orf58Q8NAV2 365 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 ISCA1Q9BUE6 129 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 MRS2Q9HD23 443 aa16.48■□□□□ 0.23
PTPRF-214ENST00000496043 TNRC6CQ9HCJ0 1690 aaKnown RBP16.47■□□□□ 0.23
PTPRF-214ENST00000496043 ARFGEF2Q9Y6D5 1785 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 ATP5J2-PTCD1G3V325 749 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 FZD9O00144 591 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 GOLGA2Q08379 1002 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 TRIM28Q13263 835 aaKnown RBP16.47■□□□□ 0.23
PTPRF-214ENST00000496043 CCDC30Q5VVM6 783 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 DDX46Q7L014 1031 aaKnown RBP16.47■□□□□ 0.23
PTPRF-214ENST00000496043 ATP6V0A2Q9Y487 856 aa16.47■□□□□ 0.23
PTPRF-214ENST00000496043 NCBP3Q53F19 620 aaKnown RBP16.46■□□□□ 0.23
PTPRF-214ENST00000496043 WWC1Q8IX03 1113 aa16.46■□□□□ 0.23
PTPRF-214ENST00000496043 SP8Q8IXZ3 490 aa16.46■□□□□ 0.23
PTPRF-214ENST00000496043 L3MBTL3Q96JM7 780 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-214ENST00000496043 VPS33BQ9H267 617 aa16.46■□□□□ 0.23
PTPRF-214ENST00000496043 PHAXQ9H814 394 aaKnown RBP16.46■□□□□ 0.23
PTPRF-214ENST00000496043 CACNA1SQ13698 1873 aa16.46■□□□□ 0.22
PTPRF-214ENST00000496043 DICER1Q9UPY3 1922 aaKnown RBP16.45■□□□□ 0.22
PTPRF-214ENST00000496043 EIF6P56537 245 aaKnown RBP16.45■□□□□ 0.22
PTPRF-214ENST00000496043 CHADLQ6NUI6 762 aa16.45■□□□□ 0.22
PTPRF-214ENST00000496043 LARGE2Q8N3Y3 721 aa16.45■□□□□ 0.22
PTPRF-214ENST00000496043 ZNF428Q96B54 188 aa16.45■□□□□ 0.22
PTPRF-214ENST00000496043 FAM89AQ96GI7 184 aa16.45■□□□□ 0.22
PTPRF-214ENST00000496043 ABCC4O15439 1325 aa16.45■□□□□ 0.22
PTPRF-214ENST00000496043 HTRA3P83110 453 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 SUPT20HQ8NEM7 779 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 TAF1DQ9H5J8 278 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-214ENST00000496043 HACL1Q9UJ83 578 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 TIAM2Q8IVF5 1701 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 WDR90Q96KV7 1748 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 ZNF541Q9H0D2 1346 aa16.44■□□□□ 0.22
PTPRF-214ENST00000496043 DDX58O95786 925 aaKnown RBP16.43■□□□□ 0.22
PTPRF-214ENST00000496043 GRAPQ13588 217 aa16.43■□□□□ 0.22
PTPRF-214ENST00000496043 SF3B3Q15393 1217 aaKnown RBP16.43■□□□□ 0.22
PTPRF-214ENST00000496043 GPC2Q8N158 579 aa16.43■□□□□ 0.22
PTPRF-214ENST00000496043 MPNDQ8N594 471 aa16.43■□□□□ 0.22
PTPRF-214ENST00000496043 TSPYL6Q8N831 410 aa16.43■□□□□ 0.22
PTPRF-214ENST00000496043 GRAPLQ8TC17 118 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-214ENST00000496043 HSP90B1P14625 803 aaKnown RBP16.42■□□□□ 0.22
PTPRF-214ENST00000496043 DPP8Q6V1X1 898 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-214ENST00000496043 TMC4Q7Z404 712 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 NIM1KQ8IY84 436 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 TSR2Q969E8 191 aaKnown RBP16.42■□□□□ 0.22
PTPRF-214ENST00000496043 KLRG1Q96E93 195 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 MYD88Q99836 296 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 SNED1Q8TER0 1413 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 IL16Q14005 1332 aa16.42■□□□□ 0.22
PTPRF-214ENST00000496043 IRS4O14654 1257 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-214ENST00000496043 PPIP5K2O43314 1243 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 POTEIP0CG38 1075 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 POTEJP0CG39 1038 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 RTL5Q5HYW3 569 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-214ENST00000496043 PNMA8AQ86V59 439 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms