RNA–Protein interactions for RNA: ENST00000494913.5

COL20A1-207, Transcript of collagen type XX alpha 1 chain, humanhuman

TSL 2

Gene COL20A1, Length 1,497 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1-207ENST00000494913 C7orf43Q8WVR3 580 aa23.24■■□□□ 1.31
COL20A1-207ENST00000494913 IL16Q14005 1332 aa23.24■■□□□ 1.31
COL20A1-207ENST00000494913 CACNA1SQ13698 1873 aa23.24■■□□□ 1.31
COL20A1-207ENST00000494913 CHMP4AQ9BY43 222 aa23.24■■□□□ 1.31
COL20A1-207ENST00000494913 TNRC6CQ9HCJ0 1690 aaKnown RBP23.23■■□□□ 1.31
COL20A1-207ENST00000494913 CCDC30Q5VVM6 783 aa23.23■■□□□ 1.31
COL20A1-207ENST00000494913 RPGRQ92834 1020 aaKnown RBP23.23■■□□□ 1.31
COL20A1-207ENST00000494913 PHAXQ9H814 394 aaKnown RBP23.23■■□□□ 1.31
COL20A1-207ENST00000494913 SLC10A5Q5PT55 438 aa23.22■■□□□ 1.31
COL20A1-207ENST00000494913 C3orf67Q6ZVT6 689 aa23.22■■□□□ 1.31
COL20A1-207ENST00000494913 ZNF428Q96B54 188 aa23.22■■□□□ 1.31
COL20A1-207ENST00000494913 NLRP3Q96P20 1036 aa23.22■■□□□ 1.31
COL20A1-207ENST00000494913 TAOK3Q9H2K8 898 aa23.22■■□□□ 1.31
COL20A1-207ENST00000494913 TRMT112Q9UI30 125 aaKnown RBP23.22■■□□□ 1.31
COL20A1-207ENST00000494913 RIC1Q4ADV7 1423 aa23.21■■□□□ 1.31
COL20A1-207ENST00000494913 OLFM4Q6UX06 510 aa23.21■■□□□ 1.31
COL20A1-207ENST00000494913 WDR63Q8IWG1 891 aa23.21■■□□□ 1.31
COL20A1-207ENST00000494913 SYNE4Q8N205 404 aa23.21■■□□□ 1.31
COL20A1-207ENST00000494913 ATP5J2-PTCD1G3V325 749 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 KIF3CO14782 793 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 HOXA10P31260 410 aaPredicted RBP23.2■■□□□ 1.3
COL20A1-207ENST00000494913 CCDC93Q567U6 631 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 RIC3Q7Z5B4 369 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 NMRK2Q9NPI5 230 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 ARFGEF2Q9Y6D5 1785 aa23.2■■□□□ 1.3
COL20A1-207ENST00000494913 FER1L6Q2WGJ9 1857 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 GOLGA2Q08379 1002 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 RBM17Q96I25 401 aaKnown RBP23.19■■□□□ 1.3
COL20A1-207ENST00000494913 ANKRD36CQ5JPF3 1778 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 RNF123Q5XPI4 1314 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 KDM2BQ8NHM5 1336 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 LTBP3Q9NS15 1303 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 CCDC88AQ3V6T2 1871 aa23.19■■□□□ 1.3
COL20A1-207ENST00000494913 HCLS1P14317 486 aaPredicted RBP23.18■■□□□ 1.3
COL20A1-207ENST00000494913 TWISTNBQ3B726 338 aaPredicted RBP23.18■■□□□ 1.3
COL20A1-207ENST00000494913 ISCA1Q9BUE6 129 aa23.18■■□□□ 1.3
COL20A1-207ENST00000494913 ZC3H4Q9UPT8 1303 aaKnown RBP23.18■■□□□ 1.3
COL20A1-207ENST00000494913 SH3TC1Q8TE82 1336 aa23.17■■□□□ 1.3
COL20A1-207ENST00000494913 TCERG1O14776 1098 aaKnown RBP23.17■■□□□ 1.3
COL20A1-207ENST00000494913 RTKN2Q8IZC4 609 aa23.17■■□□□ 1.3
COL20A1-207ENST00000494913 CRAMP1Q96RY5 1269 aa23.17■■□□□ 1.3
COL20A1-207ENST00000494913 FANCIQ9NVI1 1328 aa23.17■■□□□ 1.3
COL20A1-207ENST00000494913 STK31Q9BXU1 1019 aa23.16■■□□□ 1.3
COL20A1-207ENST00000494913 TRIM28Q13263 835 aaKnown RBP23.15■■□□□ 1.3
COL20A1-207ENST00000494913 RRAGCQ9HB90 399 aa23.15■■□□□ 1.3
COL20A1-207ENST00000494913 GLTPD2A6NH11 291 aa23.14■■□□□ 1.29
COL20A1-207ENST00000494913 DDX58O95786 925 aaKnown RBP23.14■■□□□ 1.29
COL20A1-207ENST00000494913 FKBP4Q02790 459 aaKnown RBP eCLIP23.14■■□□□ 1.29
COL20A1-207ENST00000494913 FAM89AQ96GI7 184 aa23.14■■□□□ 1.29
COL20A1-207ENST00000494913 MYD88Q99836 296 aa23.13■■□□□ 1.29
COL20A1-207ENST00000494913 SPINK5Q9NQ38 1064 aaPredicted RBP23.13■■□□□ 1.29
COL20A1-207ENST00000494913 ZNF277Q9NRM2 450 aaPredicted RBP23.13■■□□□ 1.29
COL20A1-207ENST00000494913 RTL5Q5HYW3 569 aaPredicted RBP23.12■■□□□ 1.29
COL20A1-207ENST00000494913 CC2D2BQ6DHV5 1058 aa23.12■■□□□ 1.29
COL20A1-207ENST00000494913 DPY19L2Q6NUT2 758 aa23.12■■□□□ 1.29
COL20A1-207ENST00000494913 PPEF1O14829 653 aaPredicted RBP23.11■■□□□ 1.29
COL20A1-207ENST00000494913 SLC4A2P04920 1241 aa23.11■■□□□ 1.29
COL20A1-207ENST00000494913 EXOSC9Q06265 439 aaKnown RBP23.11■■□□□ 1.29
COL20A1-207ENST00000494913 TOMM70O94826 608 aa23.11■■□□□ 1.29
COL20A1-207ENST00000494913 METTL22Q9BUU2 404 aaPredicted RBP23.11■■□□□ 1.29
COL20A1-207ENST00000494913 MAP3K2Q9Y2U5 619 aa23.11■■□□□ 1.29
COL20A1-207ENST00000494913 ABCC4O15439 1325 aa23.1■■□□□ 1.29
COL20A1-207ENST00000494913 DDX46Q7L014 1031 aaKnown RBP23.1■■□□□ 1.29
COL20A1-207ENST00000494913 SLC51AQ86UW1 340 aa23.1■■□□□ 1.29
COL20A1-207ENST00000494913 C16orf71Q8IYS4 520 aaPredicted RBP23.1■■□□□ 1.29
COL20A1-207ENST00000494913 MYH16Q9H6N6 1097 aa23.1■■□□□ 1.29
COL20A1-207ENST00000494913 TIAM2Q8IVF5 1701 aa23.1■■□□□ 1.29
COL20A1-207ENST00000494913 DICER1Q9UPY3 1922 aaKnown RBP23.1■■□□□ 1.29
COL20A1-207ENST00000494913 PI4KAP2A4QPH2 592 aa23.09■■□□□ 1.29
COL20A1-207ENST00000494913 VAMP4O75379 141 aa23.09■■□□□ 1.29
COL20A1-207ENST00000494913 KSR2Q6VAB6 950 aa23.09■■□□□ 1.29
COL20A1-207ENST00000494913 G2E3Q7L622 706 aa23.09■■□□□ 1.29
COL20A1-207ENST00000494913 PI4KAP1Q8N8J0 262 aa23.09■■□□□ 1.29
COL20A1-207ENST00000494913 CCDC191Q8NCU4 936 aa23.08■■□□□ 1.29
COL20A1-207ENST00000494913 PSMD1Q99460 953 aa23.08■■□□□ 1.29
COL20A1-207ENST00000494913 TMX4Q9H1E5 349 aaPredicted RBP23.08■■□□□ 1.29
COL20A1-207ENST00000494913 IRS4O14654 1257 aaPredicted RBP23.07■■□□□ 1.28
COL20A1-207ENST00000494913 BBOX1O75936 387 aa23.07■■□□□ 1.28
COL20A1-207ENST00000494913 GRIPAP1Q4V328 841 aa23.07■■□□□ 1.28
COL20A1-207ENST00000494913 ZBTB38Q8NAP3 1195 aaPredicted RBP23.07■■□□□ 1.28
COL20A1-207ENST00000494913 ATP6V0A2Q9Y487 856 aa23.07■■□□□ 1.28
COL20A1-207ENST00000494913 VEGFAP15692 232 aaPredicted RBP23.06■■□□□ 1.28
COL20A1-207ENST00000494913 IARSP41252 1262 aaKnown RBP23.06■■□□□ 1.28
COL20A1-207ENST00000494913 CWC25Q9NXE8 425 aaPredicted RBP23.06■■□□□ 1.28
COL20A1-207ENST00000494913 LAMB2P55268 1798 aa23.06■■□□□ 1.28
COL20A1-207ENST00000494913 SNED1Q8TER0 1413 aa23.06■■□□□ 1.28
COL20A1-207ENST00000494913 GRAPQ13588 217 aa23.05■■□□□ 1.28
COL20A1-207ENST00000494913 GRAPLQ8TC17 118 aaPredicted RBP23.05■■□□□ 1.28
COL20A1-207ENST00000494913 DDNO94850 711 aaPredicted RBP23.05■■□□□ 1.28
COL20A1-207ENST00000494913 SF3B3Q15393 1217 aaKnown RBP23.05■■□□□ 1.28
COL20A1-207ENST00000494913 JARID2Q92833 1246 aaPredicted RBP23.05■■□□□ 1.28
COL20A1-207ENST00000494913 ZNF521Q96K83 1311 aa23.04■■□□□ 1.28
COL20A1-207ENST00000494913 CCER2I3L3R5 266 aa23.04■■□□□ 1.28
COL20A1-207ENST00000494913 PCCAP05165 728 aaPredicted RBP23.04■■□□□ 1.28
COL20A1-207ENST00000494913 NEXNQ0ZGT2 675 aa23.04■■□□□ 1.28
COL20A1-207ENST00000494913 FLIIQ13045 1269 aa23.04■■□□□ 1.28
COL20A1-207ENST00000494913 SP8Q8IXZ3 490 aa23.04■■□□□ 1.28
COL20A1-207ENST00000494913 RBM46Q8TBY0 533 aaKnown RBP23.04■■□□□ 1.28
COL20A1-207ENST00000494913 DDX60Q8IY21 1712 aaKnown RBP23.03■■□□□ 1.28
COL20A1-207ENST00000494913 IGKV5-2P06315 115 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms