RNA–Protein interactions for RNA: ENST00000493916.1

SNIP1-203, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 4

Gene SNIP1, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-203ENST00000493916 C21orf2O43822 256 aa29.17■■■□□ 2.26
SNIP1-203ENST00000493916 PHAXQ9H814 394 aaKnown RBP29.17■■■□□ 2.26
SNIP1-203ENST00000493916 SBF1O95248 1867 aa29.17■■■□□ 2.26
SNIP1-203ENST00000493916 NFKBIEO00221 500 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 RASSF7Q02833 373 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 GOLGA2Q08379 1002 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 SLC10A5Q5PT55 438 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 SOGA3Q5TF21 947 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 ISCA1Q9BUE6 129 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 ZNF521Q96K83 1311 aa29.16■■■□□ 2.26
SNIP1-203ENST00000493916 RNF181Q9P0P0 153 aa29.15■■■□□ 2.26
SNIP1-203ENST00000493916 FER1L6Q2WGJ9 1857 aa29.14■■■□□ 2.26
SNIP1-203ENST00000493916 ALDH1B1P30837 517 aa29.14■■■□□ 2.26
SNIP1-203ENST00000493916 C7orf43Q8WVR3 580 aa29.14■■■□□ 2.26
SNIP1-203ENST00000493916 STK31Q9BXU1 1019 aa29.14■■■□□ 2.26
SNIP1-203ENST00000493916 LMNB1P20700 586 aa29.13■■■□□ 2.25
SNIP1-203ENST00000493916 HOXA10P31260 410 aaPredicted RBP29.13■■■□□ 2.25
SNIP1-203ENST00000493916 MYH16Q9H6N6 1097 aa29.13■■■□□ 2.25
SNIP1-203ENST00000493916 SPINK5Q9NQ38 1064 aaPredicted RBP29.13■■■□□ 2.25
SNIP1-203ENST00000493916 ZNF219Q9P2Y4 722 aaPredicted RBP29.13■■■□□ 2.25
SNIP1-203ENST00000493916 LTBP3Q9NS15 1303 aa29.13■■■□□ 2.25
SNIP1-203ENST00000493916 TRIM28Q13263 835 aaKnown RBP29.12■■■□□ 2.25
SNIP1-203ENST00000493916 RIC3Q7Z5B4 369 aa29.12■■■□□ 2.25
SNIP1-203ENST00000493916 RPGRQ92834 1020 aaKnown RBP29.12■■■□□ 2.25
SNIP1-203ENST00000493916 GPBP1L1Q9HC44 474 aaPredicted RBP29.12■■■□□ 2.25
SNIP1-203ENST00000493916 TRMT112Q9UI30 125 aaKnown RBP29.12■■■□□ 2.25
SNIP1-203ENST00000493916 SH3TC1Q8TE82 1336 aa29.12■■■□□ 2.25
SNIP1-203ENST00000493916 DDX58O95786 925 aaKnown RBP29.11■■■□□ 2.25
SNIP1-203ENST00000493916 PRELPP51888 382 aa29.11■■■□□ 2.25
SNIP1-203ENST00000493916 NLRP3Q96P20 1036 aa29.11■■■□□ 2.25
SNIP1-203ENST00000493916 ZC3H4Q9UPT8 1303 aaKnown RBP29.11■■■□□ 2.25
SNIP1-203ENST00000493916 C3orf67Q6ZVT6 689 aa29.1■■■□□ 2.25
SNIP1-203ENST00000493916 ATP5J2-PTCD1G3V325 749 aa29.09■■■□□ 2.25
SNIP1-203ENST00000493916 EXOSC9Q06265 439 aaKnown RBP29.09■■■□□ 2.25
SNIP1-203ENST00000493916 CCDC93Q567U6 631 aa29.09■■■□□ 2.25
SNIP1-203ENST00000493916 ZNF526Q8TF50 670 aaPredicted RBP29.09■■■□□ 2.25
SNIP1-203ENST00000493916 VAMP4O75379 141 aa29.08■■■□□ 2.25
SNIP1-203ENST00000493916 RBM17Q96I25 401 aaKnown RBP29.08■■■□□ 2.25
SNIP1-203ENST00000493916 CRAMP1Q96RY5 1269 aa29.08■■■□□ 2.25
SNIP1-203ENST00000493916 TAOK3Q9H2K8 898 aa29.08■■■□□ 2.25
SNIP1-203ENST00000493916 LAMB2P55268 1798 aa29.08■■■□□ 2.25
SNIP1-203ENST00000493916 TIAM2Q8IVF5 1701 aa29.07■■■□□ 2.24
SNIP1-203ENST00000493916 SYNE4Q8N205 404 aa29.06■■■□□ 2.24
SNIP1-203ENST00000493916 DDX60Q8IY21 1712 aaKnown RBP29.06■■■□□ 2.24
SNIP1-203ENST00000493916 TCERG1O14776 1098 aaKnown RBP29.05■■■□□ 2.24
SNIP1-203ENST00000493916 SLC4A2P04920 1241 aa29.05■■■□□ 2.24
SNIP1-203ENST00000493916 HCLS1P14317 486 aaPredicted RBP29.05■■■□□ 2.24
SNIP1-203ENST00000493916 METTL22Q9BUU2 404 aaPredicted RBP29.05■■■□□ 2.24
SNIP1-203ENST00000493916 SNED1Q8TER0 1413 aa29.04■■■□□ 2.24
SNIP1-203ENST00000493916 KSR2Q6VAB6 950 aa29.04■■■□□ 2.24
SNIP1-203ENST00000493916 MYD88Q99836 296 aa29.04■■■□□ 2.24
SNIP1-203ENST00000493916 DIEXFQ68CQ4 756 aaKnown RBP29.03■■■□□ 2.24
SNIP1-203ENST00000493916 RTKN2Q8IZC4 609 aa29.03■■■□□ 2.24
SNIP1-203ENST00000493916 MAP3K2Q9Y2U5 619 aa29.03■■■□□ 2.24
SNIP1-203ENST00000493916 CC2D2BQ6DHV5 1058 aa29.02■■■□□ 2.24
SNIP1-203ENST00000493916 G2E3Q7L622 706 aa29.02■■■□□ 2.24
SNIP1-203ENST00000493916 CCDC191Q8NCU4 936 aa29.02■■■□□ 2.24
SNIP1-203ENST00000493916 FAM89AQ96GI7 184 aa29.02■■■□□ 2.24
SNIP1-203ENST00000493916 CCDC88AQ3V6T2 1871 aa29.02■■■□□ 2.24
SNIP1-203ENST00000493916 CACNA1FO60840 1977 aa29.01■■■□□ 2.23
SNIP1-203ENST00000493916 DICER1Q9UPY3 1922 aaKnown RBP29.01■■■□□ 2.23
SNIP1-203ENST00000493916 PI4KAP2A4QPH2 592 aa29.01■■■□□ 2.23
SNIP1-203ENST00000493916 FKBP4Q02790 459 aaKnown RBP eCLIP29.01■■■□□ 2.23
SNIP1-203ENST00000493916 OLFM4Q6UX06 510 aa29.01■■■□□ 2.23
SNIP1-203ENST00000493916 PI4KAP1Q8N8J0 262 aa29.01■■■□□ 2.23
SNIP1-203ENST00000493916 ZBTB38Q8NAP3 1195 aaPredicted RBP29.01■■■□□ 2.23
SNIP1-203ENST00000493916 ZNF428Q96B54 188 aa29.01■■■□□ 2.23
SNIP1-203ENST00000493916 ABCC4O15439 1325 aa29■■■□□ 2.23
SNIP1-203ENST00000493916 PPEF1O14829 653 aaPredicted RBP29■■■□□ 2.23
SNIP1-203ENST00000493916 FLIIQ13045 1269 aa29■■■□□ 2.23
SNIP1-203ENST00000493916 KDM2BQ8NHM5 1336 aa28.99■■■□□ 2.23
SNIP1-203ENST00000493916 GRIPAP1Q4V328 841 aa28.99■■■□□ 2.23
SNIP1-203ENST00000493916 CWC25Q9NXE8 425 aaPredicted RBP28.99■■■□□ 2.23
SNIP1-203ENST00000493916 E9PSI1 815 aa28.98■■■□□ 2.23
SNIP1-203ENST00000493916 C1QTNF8P60827 252 aa28.98■■■□□ 2.23
SNIP1-203ENST00000493916 IRS4O14654 1257 aaPredicted RBP28.97■■■□□ 2.23
SNIP1-203ENST00000493916 KIF3CO14782 793 aa28.97■■■□□ 2.23
SNIP1-203ENST00000493916 PCCAP05165 728 aaPredicted RBP28.97■■■□□ 2.23
SNIP1-203ENST00000493916 PSMD1Q99460 953 aa28.97■■■□□ 2.23
SNIP1-203ENST00000493916 IGKV5-2P06315 115 aa28.96■■■□□ 2.23
SNIP1-203ENST00000493916 HSP90B1P14625 803 aaKnown RBP28.96■■■□□ 2.23
SNIP1-203ENST00000493916 NEXNQ0ZGT2 675 aa28.96■■■□□ 2.23
SNIP1-203ENST00000493916 SF3B3Q15393 1217 aaKnown RBP28.96■■■□□ 2.23
SNIP1-203ENST00000493916 DDX46Q7L014 1031 aaKnown RBP28.96■■■□□ 2.23
SNIP1-203ENST00000493916 ATP6V0A2Q9Y487 856 aa28.95■■■□□ 2.22
SNIP1-203ENST00000493916 GLTPD2A6NH11 291 aa28.94■■■□□ 2.22
SNIP1-203ENST00000493916 BBOX1O75936 387 aa28.94■■■□□ 2.22
SNIP1-203ENST00000493916 FKBP5Q13451 457 aaPredicted RBP28.94■■■□□ 2.22
SNIP1-203ENST00000493916 GRAPQ13588 217 aa28.94■■■□□ 2.22
SNIP1-203ENST00000493916 RTL5Q5HYW3 569 aaPredicted RBP28.94■■■□□ 2.22
SNIP1-203ENST00000493916 GRAPLQ8TC17 118 aaPredicted RBP28.94■■■□□ 2.22
SNIP1-203ENST00000493916 NMRK2Q9NPI5 230 aa28.94■■■□□ 2.22
SNIP1-203ENST00000493916 SLFN5Q08AF3 891 aa28.93■■■□□ 2.22
SNIP1-203ENST00000493916 MIER1Q8N108 512 aa28.93■■■□□ 2.22
SNIP1-203ENST00000493916 ZNF277Q9NRM2 450 aaPredicted RBP28.93■■■□□ 2.22
SNIP1-203ENST00000493916 NEURL1BA8MQ27 555 aa28.91■■■□□ 2.22
SNIP1-203ENST00000493916 TMC4Q7Z404 712 aa28.91■■■□□ 2.22
SNIP1-203ENST00000493916 DNAAF4Q8WXU2 420 aa28.91■■■□□ 2.22
SNIP1-203ENST00000493916 TMX4Q9H1E5 349 aaPredicted RBP28.91■■■□□ 2.22
SNIP1-203ENST00000493916 CDHR2Q9BYE9 1310 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms