RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ZSWIM6Q9HCJ5 1215 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 TUBGCP6Q96RT7 1819 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 STAG3Q9UJ98 1225 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 BECN2A8MW95 431 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 TRIM66O15016 1216 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 CNTROBQ8N137 903 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 SMARCE1Q969G3 411 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 L2HGDHQ9H9P8 463 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 CDK12Q9NYV4 1490 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-210ENST00000493582 SEC31AO94979 1220 aaKnown RBP13.76□□□□□ -0.21
HDAC4-210ENST00000493582 CEBPZQ03701 1054 aaKnown RBP13.76□□□□□ -0.21
HDAC4-210ENST00000493582 RNF20Q5VTR2 975 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 E4F1Q66K89 784 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-210ENST00000493582 SARM1Q6SZW1 724 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 LCMT1Q9UIC8 334 aa13.76□□□□□ -0.21
HDAC4-210ENST00000493582 TEX35Q5T0J7 233 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 C10orf67Q8IYJ2 551 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 STK3Q13188 491 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 ERCC4Q92889 916 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-210ENST00000493582 DDX11Q96FC9 970 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 AOX1Q06278 1338 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 PTPRMP28827 1452 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 TMCO3Q6UWJ1 677 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 RHPN1Q8TCX5 695 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
HDAC4-210ENST00000493582 FOXO3O43524 673 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 ZRANB2O95218 330 aaKnown RBP eCLIP13.74□□□□□ -0.21
HDAC4-210ENST00000493582 CCDC93Q567U6 631 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 WAPLQ7Z5K2 1190 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 EPC1Q9H2F5 836 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.74□□□□□ -0.21
HDAC4-210ENST00000493582 SOS1Q07889 1333 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-210ENST00000493582 TTC21BQ7Z4L5 1316 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 RAB11FIP3O75154 756 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 FLIIQ13045 1269 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 PPP1R13BQ96KQ4 1090 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 USP44Q9H0E7 712 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 RASSF4Q9H2L5 321 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 PPP6R1Q9UPN7 881 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 KIF20BQ96Q89 1820 aa13.74□□□□□ -0.21
HDAC4-210ENST00000493582 PDCP20941 246 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 STK31Q9BXU1 1019 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 GYS2P54840 703 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 AEBP2Q6ZN18 517 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-210ENST00000493582 PPP1R42Q7Z4L9 355 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 UBXN4Q92575 508 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 KIF2AO00139 706 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-210ENST00000493582 TPM4P67936 248 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 DHX40Q8IX18 779 aaKnown RBP13.73□□□□□ -0.21
HDAC4-210ENST00000493582 TXLNBQ8N3L3 684 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 AATKQ6ZMQ8 1374 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 NEXMIFQ5QGS0 1516 aa13.73□□□□□ -0.21
HDAC4-210ENST00000493582 IFIT2P09913 472 aaKnown RBP13.72□□□□□ -0.21
HDAC4-210ENST00000493582 UBTFL1P0CB47 393 aaPredicted RBP13.72□□□□□ -0.21
HDAC4-210ENST00000493582 CCDC191Q8NCU4 936 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 COG3Q96JB2 828 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 MYO1CO00159 1063 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 CAVIN2O95810 425 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 EIF4A2Q14240 407 aaKnown RBP13.72□□□□□ -0.21
HDAC4-210ENST00000493582 ZSCAN26Q16670 478 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 NBPF11Q86T75 865 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 HOMER1Q86YM7 354 aa13.72□□□□□ -0.21
HDAC4-210ENST00000493582 ORC3Q9UBD5 711 aaPredicted RBP13.72□□□□□ -0.21
HDAC4-210ENST00000493582 ZKSCAN1P17029 563 aaPredicted RBP13.71□□□□□ -0.21
HDAC4-210ENST00000493582 AOPEPQ8N6M6 819 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 SSH3Q8TE77 659 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 TM6SF1Q9BZW5 370 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 SIGLEC1Q9BZZ2 1709 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 NCKAP5LQ9HCH0 1330 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 SASH3O75995 380 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 NECTIN1Q15223 517 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 STX1AQ16623 288 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 CHMP4CQ96CF2 233 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 ARGLU1Q9NWB6 273 aaPredicted RBP13.71□□□□□ -0.21
HDAC4-210ENST00000493582 DNAI1Q9UI46 699 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 PIK3C2BO00750 1634 aa13.71□□□□□ -0.21
HDAC4-210ENST00000493582 OAS2P29728 719 aaKnown RBP13.71□□□□□ -0.22
HDAC4-210ENST00000493582 MUM1L1Q5H9M0 696 aa13.71□□□□□ -0.22
HDAC4-210ENST00000493582 KCND1Q9NSA2 647 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 RBM8AQ9Y5S9 174 aaKnown RBP13.7□□□□□ -0.22
HDAC4-210ENST00000493582 CLTCQ00610 1675 aaKnown RBP13.7□□□□□ -0.22
HDAC4-210ENST00000493582 HECW2Q9P2P5 1572 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 SRGAP3O43295 1099 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 JAK2O60674 1132 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 CREB3L3Q68CJ9 461 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 ARMCX5Q6P1M9 558 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 FTOQ9C0B1 505 aaKnown RBP eCLIP13.7□□□□□ -0.225e-6■□□□□ 9.9
HDAC4-210ENST00000493582 TAF6LQ9Y6J9 622 aa13.7□□□□□ -0.22
HDAC4-210ENST00000493582 EFCC1Q9HA90 598 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 DHX16O60231 1041 aaKnown RBP13.69□□□□□ -0.22
HDAC4-210ENST00000493582 NOP2P46087 812 aaKnown RBP13.69□□□□□ -0.22
HDAC4-210ENST00000493582 GSDMDP57764 484 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 CCAR1Q8IX12 1150 aaKnown RBP13.69□□□□□ -0.22
HDAC4-210ENST00000493582 RUFY2Q8WXA3 655 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 CRB1P82279 1406 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 TMC6Q7Z403 805 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 RGS22Q8NE09 1264 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 MNS1Q8NEH6 495 aa13.69□□□□□ -0.22
HDAC4-210ENST00000493582 GOLPH3LQ9H4A5 285 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms