RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 RTKN2Q8IZC4 609 aa14.93□□□□□ -0.02
LRTM1-202ENST00000493075 RBM46Q8TBY0 533 aaKnown RBP14.93□□□□□ -0.02
LRTM1-202ENST00000493075 UTP14AQ9BVJ6 771 aaKnown RBP14.93□□□□□ -0.02
LRTM1-202ENST00000493075 AIMP1Q12904 312 aaKnown RBP14.92□□□□□ -0.02
LRTM1-202ENST00000493075 CCDC27Q2M243 656 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 CC2D2BQ6DHV5 1058 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 C16orf71Q8IYS4 520 aaPredicted RBP14.92□□□□□ -0.02
LRTM1-202ENST00000493075 CRAMP1Q96RY5 1269 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 CHMP4AQ9BY43 222 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 HYPKQ9NX55 129 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 CHPF2Q9P2E5 772 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 ABCC12Q96J65 1359 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 VEGFAP15692 232 aaPredicted RBP14.92□□□□□ -0.02
LRTM1-202ENST00000493075 FKBP4Q02790 459 aaKnown RBP eCLIP14.92□□□□□ -0.02
LRTM1-202ENST00000493075 GRIPAP1Q4V328 841 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 ANKRD13DQ6ZTN6 518 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 NLRP10Q86W26 655 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 PLBD2Q8NHP8 589 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 NLRP3Q96P20 1036 aa14.92□□□□□ -0.02
LRTM1-202ENST00000493075 FSTL1Q12841 308 aa14.91□□□□□ -0.02
LRTM1-202ENST00000493075 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
LRTM1-202ENST00000493075 RBM17Q96I25 401 aaKnown RBP14.91□□□□□ -0.02
LRTM1-202ENST00000493075 COL11A2P13942 1736 aaPredicted RBP14.9□□□□□ -0.02
LRTM1-202ENST00000493075 PSMD1Q99460 953 aa14.89□□□□□ -0.03
LRTM1-202ENST00000493075 MRS2Q9HD23 443 aa14.89□□□□□ -0.03
LRTM1-202ENST00000493075 SBF1O95248 1867 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 SLX4Q8IY92 1834 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 APLP1P51693 650 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 TRIM28Q13263 835 aaKnown RBP14.88□□□□□ -0.03
LRTM1-202ENST00000493075 WWC1Q8IX03 1113 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 SYNE4Q8N205 404 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 ISCA1Q9BUE6 129 aa14.88□□□□□ -0.03
LRTM1-202ENST00000493075 TRMT112Q9UI30 125 aaKnown RBP14.88□□□□□ -0.03
LRTM1-202ENST00000493075 POTECB2RU33 542 aa14.87□□□□□ -0.03
LRTM1-202ENST00000493075 OLFM4Q6UX06 510 aa14.87□□□□□ -0.03
LRTM1-202ENST00000493075 C3orf67Q6ZVT6 689 aa14.87□□□□□ -0.03
LRTM1-202ENST00000493075 C8orf58Q8NAV2 365 aa14.87□□□□□ -0.03
LRTM1-202ENST00000493075 SMC1BQ8NDV3 1235 aa14.87□□□□□ -0.03
LRTM1-202ENST00000493075 IL16Q14005 1332 aa14.86□□□□□ -0.03
LRTM1-202ENST00000493075 SH3TC1Q8TE82 1336 aa14.86□□□□□ -0.03
LRTM1-202ENST00000493075 ELL2O00472 640 aaPredicted RBP14.86□□□□□ -0.03
LRTM1-202ENST00000493075 BBOX1O75936 387 aa14.86□□□□□ -0.03
LRTM1-202ENST00000493075 CCDC30Q5VVM6 783 aa14.86□□□□□ -0.03
LRTM1-202ENST00000493075 ZNF277Q9NRM2 450 aaPredicted RBP14.86□□□□□ -0.03
LRTM1-202ENST00000493075 NUP98P52948 1817 aa14.86□□□□□ -0.03
LRTM1-202ENST00000493075 SNED1Q8TER0 1413 aa14.85□□□□□ -0.03
LRTM1-202ENST00000493075 PPEF1O14829 653 aaPredicted RBP14.85□□□□□ -0.03
LRTM1-202ENST00000493075 IARSP41252 1262 aaKnown RBP14.85□□□□□ -0.03
LRTM1-202ENST00000493075 TMX4Q9H1E5 349 aaPredicted RBP14.85□□□□□ -0.03
LRTM1-202ENST00000493075 ATP6V0A2Q9Y487 856 aa14.85□□□□□ -0.03
LRTM1-202ENST00000493075 FER1L6Q2WGJ9 1857 aa14.85□□□□□ -0.03
LRTM1-202ENST00000493075 DDNO94850 711 aaPredicted RBP14.84□□□□□ -0.03
LRTM1-202ENST00000493075 HCLS1P14317 486 aaPredicted RBP14.84□□□□□ -0.03
LRTM1-202ENST00000493075 GOLGA2Q08379 1002 aa14.84□□□□□ -0.03
LRTM1-202ENST00000493075 RIC3Q7Z5B4 369 aa14.84□□□□□ -0.03
LRTM1-202ENST00000493075 L3MBTL3Q96JM7 780 aaPredicted RBP14.84□□□□□ -0.03
LRTM1-202ENST00000493075 VPS33BQ9H267 617 aa14.84□□□□□ -0.03
LRTM1-202ENST00000493075 ARFGEF2Q9Y6D5 1785 aa14.83□□□□□ -0.03
LRTM1-202ENST00000493075 FZD9O00144 591 aa14.83□□□□□ -0.04
LRTM1-202ENST00000493075 DDX46Q7L014 1031 aaKnown RBP14.83□□□□□ -0.04
LRTM1-202ENST00000493075 WDR63Q8IWG1 891 aa14.83□□□□□ -0.04
LRTM1-202ENST00000493075 SP8Q8IXZ3 490 aa14.83□□□□□ -0.04
LRTM1-202ENST00000493075 JDP2Q8WYK2 163 aa14.83□□□□□ -0.04
LRTM1-202ENST00000493075 PHAXQ9H814 394 aaKnown RBP14.83□□□□□ -0.04
LRTM1-202ENST00000493075 IQCA1LA6NCM1 817 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 ATP5J2-PTCD1G3V325 749 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 DDX58O95786 925 aaKnown RBP14.82□□□□□ -0.04
LRTM1-202ENST00000493075 KCNA4P22459 653 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 SF3B3Q15393 1217 aaKnown RBP14.82□□□□□ -0.04
LRTM1-202ENST00000493075 TMC4Q7Z404 712 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 TSPYL6Q8N831 410 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 FAM89AQ96GI7 184 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 TNRC6CQ9HCJ0 1690 aaKnown RBP14.82□□□□□ -0.04
LRTM1-202ENST00000493075 ABCC4O15439 1325 aa14.82□□□□□ -0.04
LRTM1-202ENST00000493075 HSP90B1P14625 803 aaKnown RBP14.81□□□□□ -0.04
LRTM1-202ENST00000493075 GRAPQ13588 217 aa14.81□□□□□ -0.04
LRTM1-202ENST00000493075 DNAJC5GQ8N7S2 189 aa14.81□□□□□ -0.04
LRTM1-202ENST00000493075 GRAPLQ8TC17 118 aaPredicted RBP14.81□□□□□ -0.04
LRTM1-202ENST00000493075 TSR2Q969E8 191 aaKnown RBP14.81□□□□□ -0.04
LRTM1-202ENST00000493075 RTFDC1Q9BY42 306 aaPredicted RBP14.81□□□□□ -0.04
LRTM1-202ENST00000493075 WDR90Q96KV7 1748 aa14.8□□□□□ -0.04
LRTM1-202ENST00000493075 TCERG1O14776 1098 aaKnown RBP14.8□□□□□ -0.04
LRTM1-202ENST00000493075 ZBTB38Q8NAP3 1195 aaPredicted RBP14.8□□□□□ -0.04
LRTM1-202ENST00000493075 CCDC191Q8NCU4 936 aa14.8□□□□□ -0.04
LRTM1-202ENST00000493075 SUPT20HQ8NEM7 779 aa14.8□□□□□ -0.04
LRTM1-202ENST00000493075 METTL22Q9BUU2 404 aaPredicted RBP14.8□□□□□ -0.04
LRTM1-202ENST00000493075 IRS4O14654 1257 aaPredicted RBP14.79□□□□□ -0.04
LRTM1-202ENST00000493075 TWISTNBQ3B726 338 aaPredicted RBP14.79□□□□□ -0.04
LRTM1-202ENST00000493075 GPC2Q8N158 579 aa14.79□□□□□ -0.04
LRTM1-202ENST00000493075 LARGE2Q8N3Y3 721 aa14.79□□□□□ -0.04
LRTM1-202ENST00000493075 STK31Q9BXU1 1019 aa14.79□□□□□ -0.04
LRTM1-202ENST00000493075 ZNF541Q9H0D2 1346 aa14.79□□□□□ -0.04
LRTM1-202ENST00000493075 EIF6P56537 245 aaKnown RBP14.78□□□□□ -0.04
LRTM1-202ENST00000493075 KSR2Q6VAB6 950 aa14.78□□□□□ -0.04
LRTM1-202ENST00000493075 MPNDQ8N594 471 aa14.78□□□□□ -0.04
LRTM1-202ENST00000493075 MYD88Q99836 296 aa14.78□□□□□ -0.04
LRTM1-202ENST00000493075 TAF1DQ9H5J8 278 aaPredicted RBP14.78□□□□□ -0.04
LRTM1-202ENST00000493075 TIAM2Q8IVF5 1701 aa14.77□□□□□ -0.04
LRTM1-202ENST00000493075 PCCAP05165 728 aaPredicted RBP14.77□□□□□ -0.04
LRTM1-202ENST00000493075 CHADLQ6NUI6 762 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms