RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RIC3Q7Z5B4 369 aa13.12□□□□□ -0.31
USP4-214ENST00000491791 VSIG10Q8N0Z9 540 aa13.12□□□□□ -0.31
USP4-214ENST00000491791 SUCLG2Q96I99 432 aa13.12□□□□□ -0.31
USP4-214ENST00000491791 COPRSQ9NQ92 184 aa13.12□□□□□ -0.31
USP4-214ENST00000491791 EXOC5O00471 708 aa13.11□□□□□ -0.31
USP4-214ENST00000491791 TICAM2Q86XR7 235 aa13.11□□□□□ -0.31
USP4-214ENST00000491791 CLASRPQ8N2M8 674 aaKnown RBP13.11□□□□□ -0.31
USP4-214ENST00000491791 SLKQ9H2G2 1235 aaPredicted RBP13.11□□□□□ -0.31
USP4-214ENST00000491791 BCL9O00512 1426 aa13.11□□□□□ -0.31
USP4-214ENST00000491791 TOGARAM1Q9Y4F4 1720 aa13.1□□□□□ -0.31
USP4-214ENST00000491791 MCM2P49736 904 aa13.1□□□□□ -0.31
USP4-214ENST00000491791 CASP7P55210 303 aa13.1□□□□□ -0.31
USP4-214ENST00000491791 MARCH10Q8NA82 808 aaPredicted RBP13.1□□□□□ -0.31
USP4-214ENST00000491791 TEX13AQ9BXU3 409 aaPredicted RBP13.1□□□□□ -0.31
USP4-214ENST00000491791 ECHDC1Q9NTX5 307 aa13.1□□□□□ -0.31
USP4-214ENST00000491791 NBPF26B4DH59 902 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 H7C1W4 665 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 CD2BP2O95400 341 aaKnown RBP13.09□□□□□ -0.31
USP4-214ENST00000491791 GSE1Q14687 1217 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 NBPF10Q6P3W6 841 aaKnown RBP13.09□□□□□ -0.31
USP4-214ENST00000491791 CNTROBQ8N137 903 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 NBPF15Q8N660 670 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 BICC1Q9H694 974 aaKnown RBP13.09□□□□□ -0.31
USP4-214ENST00000491791 IL1RAPL2Q9NP60 686 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 SNRKQ9NRH2 765 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 STK32BQ9NY57 414 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 SBF2Q86WG5 1849 aa13.09□□□□□ -0.31
USP4-214ENST00000491791 AK9Q5TCS8 1911 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 SGSM2O43147 1006 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 ST18O60284 1047 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 SASH1O94885 1247 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 MCCP23508 829 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 MCM4P33991 863 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 RFX5P48382 616 aaPredicted RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 TRIM28Q13263 835 aaKnown RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 RAB3GAP1Q15042 981 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 GPATCH3Q96I76 525 aa13.08□□□□□ -0.32
USP4-214ENST00000491791 RBM42Q9BTD8 480 aaKnown RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 ANO8Q9HCE9 1232 aaPredicted RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 CWC22Q9HCG8 908 aaKnown RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 AFDNP55196 1824 aaKnown RBP13.08□□□□□ -0.32
USP4-214ENST00000491791 PTMSP20962 102 aa13.07□□□□□ -0.32
USP4-214ENST00000491791 AIMP1Q12904 312 aaKnown RBP13.07□□□□□ -0.32
USP4-214ENST00000491791 G3BP1Q13283 466 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP4-214ENST00000491791 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
USP4-214ENST00000491791 KCNB2Q92953 911 aa13.07□□□□□ -0.32
USP4-214ENST00000491791 MYD88Q99836 296 aa13.07□□□□□ -0.32
USP4-214ENST00000491791 ATG3Q9NT62 314 aa13.07□□□□□ -0.32
USP4-214ENST00000491791 WNK3Q9BYP7 1800 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 TRIM6-TRIM34B2RNG4 842 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 MYL6BP14649 208 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 HSPA4P34932 840 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 TXNRD1Q16881 649 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 PTF1AQ7RTS3 328 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 CCDC191Q8NCU4 936 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 RFX7Q2KHR2 1363 aa13.06□□□□□ -0.32
USP4-214ENST00000491791 TJP1Q07157 1748 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 DDX11L8A8MPP1 907 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 HIP1O00291 1037 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 ZBTB7AO95365 584 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 IFIT2P09913 472 aaKnown RBP13.05□□□□□ -0.32
USP4-214ENST00000491791 TSHZ3Q63HK5 1081 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 PROM2Q8N271 834 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 RILPL2Q969X0 211 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 EVI5LQ96CN4 794 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 GPR108Q9NPR9 543 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 RAD50Q92878 1312 aa13.05□□□□□ -0.32
USP4-214ENST00000491791 CYP2E1P05181 493 aaPredicted RBP13.04□□□□□ -0.32
USP4-214ENST00000491791 PTPN12Q05209 780 aaKnown RBP13.04□□□□□ -0.32
USP4-214ENST00000491791 OS9Q13438 667 aaPredicted RBP13.04□□□□□ -0.32
USP4-214ENST00000491791 CUL4AQ13619 759 aa13.04□□□□□ -0.32
USP4-214ENST00000491791 SLC15A2Q16348 729 aa13.04□□□□□ -0.32
USP4-214ENST00000491791 EPHA10Q5JZY3 1008 aa13.04□□□□□ -0.32
USP4-214ENST00000491791 RUFY2Q8WXA3 655 aa13.04□□□□□ -0.32
USP4-214ENST00000491791 EAF2Q96CJ1 260 aaPredicted RBP13.04□□□□□ -0.32
USP4-214ENST00000491791 ISCA1Q9BUE6 129 aa13.04□□□□□ -0.32
USP4-214ENST00000491791 LSG1Q9H089 658 aaKnown RBP13.04□□□□□ -0.32
USP4-214ENST00000491791 CICQ96RK0 1608 aaPredicted RBP13.03□□□□□ -0.32
USP4-214ENST00000491791 CASZ1Q86V15 1759 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 NUCB2P80303 420 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 FOXO4P98177 505 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 INTS4Q96HW7 963 aaKnown RBP13.03□□□□□ -0.32
USP4-214ENST00000491791 CWC25Q9NXE8 425 aaPredicted RBP13.03□□□□□ -0.32
USP4-214ENST00000491791 TMOD3Q9NYL9 352 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 FBXO3Q9UK99 471 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 PA2G4Q9UQ80 394 aaKnown RBP13.03□□□□□ -0.32
USP4-214ENST00000491791 ITGB4P16144 1822 aa13.03□□□□□ -0.32
USP4-214ENST00000491791 A0A087WZG4 1122 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 ATP5JP18859 108 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 AACSQ86V21 672 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 TNPO1Q92973 898 aaKnown RBP13.02□□□□□ -0.33
USP4-214ENST00000491791 GBP4Q96PP9 640 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 PLA2G12BQ9BX93 195 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 MTFR1LQ9H019 292 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.33
USP4-214ENST00000491791 ATF5Q9Y2D1 282 aaPredicted RBP13.02□□□□□ -0.33
USP4-214ENST00000491791 TTLL7Q6ZT98 887 aa13.01□□□□□ -0.33
USP4-214ENST00000491791 DDX54Q8TDD1 881 aaKnown RBP13.01□□□□□ -0.33
USP4-214ENST00000491791 ACSBG1Q96GR2 724 aa13.01□□□□□ -0.33
USP4-214ENST00000491791 TM6SF1Q9BZW5 370 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms