RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ELL2O00472 640 aaPredicted RBP19.51■□□□□ 0.71
USP39-217ENST00000491659 ALDH1B1P30837 517 aa19.51■□□□□ 0.71
USP39-217ENST00000491659 RPGRQ92834 1020 aaKnown RBP19.51■□□□□ 0.71
USP39-217ENST00000491659 IL16Q14005 1332 aa19.51■□□□□ 0.71
USP39-217ENST00000491659 TCIRG1Q13488 830 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 CRY2Q49AN0 593 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 CCDC93Q567U6 631 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 FAM9BQ8IZU0 186 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 C8orf58Q8NAV2 365 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 PLBD2Q8NHP8 589 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 TSR2Q969E8 191 aaKnown RBP19.5■□□□□ 0.71
USP39-217ENST00000491659 TAOK3Q9H2K8 898 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 KDM2BQ8NHM5 1336 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 LTBP3Q9NS15 1303 aa19.5■□□□□ 0.71
USP39-217ENST00000491659 ANKRD13DQ6ZTN6 518 aa19.49■□□□□ 0.71
USP39-217ENST00000491659 CCDC30Q5VVM6 783 aa19.48■□□□□ 0.71
USP39-217ENST00000491659 NLRP10Q86W26 655 aa19.48■□□□□ 0.71
USP39-217ENST00000491659 PRELPP51888 382 aa19.47■□□□□ 0.71
USP39-217ENST00000491659 GOLGA2Q08379 1002 aa19.47■□□□□ 0.71
USP39-217ENST00000491659 SALL2Q9Y467 1007 aaPredicted RBP19.47■□□□□ 0.71
USP39-217ENST00000491659 DDX60Q8IY21 1712 aaKnown RBP19.47■□□□□ 0.71
USP39-217ENST00000491659 KIF3CO14782 793 aa19.46■□□□□ 0.71
USP39-217ENST00000491659 RBM17Q96I25 401 aaKnown RBP19.46■□□□□ 0.71
USP39-217ENST00000491659 NLRP3Q96P20 1036 aa19.46■□□□□ 0.71
USP39-217ENST00000491659 TRMT112Q9UI30 125 aaKnown RBP19.46■□□□□ 0.71
USP39-217ENST00000491659 SH3TC1Q8TE82 1336 aa19.46■□□□□ 0.71
USP39-217ENST00000491659 RIC3Q7Z5B4 369 aa19.45■□□□□ 0.7
USP39-217ENST00000491659 WDR63Q8IWG1 891 aa19.45■□□□□ 0.7
USP39-217ENST00000491659 TSPYL6Q8N831 410 aa19.45■□□□□ 0.7
USP39-217ENST00000491659 C7orf43Q8WVR3 580 aa19.45■□□□□ 0.7
USP39-217ENST00000491659 NMRK2Q9NPI5 230 aa19.45■□□□□ 0.7
USP39-217ENST00000491659 HOXA10P31260 410 aaPredicted RBP19.44■□□□□ 0.7
USP39-217ENST00000491659 TWISTNBQ3B726 338 aaPredicted RBP19.44■□□□□ 0.7
USP39-217ENST00000491659 SLC10A5Q5PT55 438 aa19.44■□□□□ 0.7
USP39-217ENST00000491659 RTKN2Q8IZC4 609 aa19.44■□□□□ 0.7
USP39-217ENST00000491659 STK31Q9BXU1 1019 aa19.44■□□□□ 0.7
USP39-217ENST00000491659 PHAXQ9H814 394 aaKnown RBP19.44■□□□□ 0.7
USP39-217ENST00000491659 FANCIQ9NVI1 1328 aa19.44■□□□□ 0.7
USP39-217ENST00000491659 DDX58O95786 925 aaKnown RBP19.43■□□□□ 0.7
USP39-217ENST00000491659 FKBP4Q02790 459 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP39-217ENST00000491659 C3orf67Q6ZVT6 689 aa19.43■□□□□ 0.7
USP39-217ENST00000491659 CRAMP1Q96RY5 1269 aa19.43■□□□□ 0.7
USP39-217ENST00000491659 ISCA1Q9BUE6 129 aa19.43■□□□□ 0.7
USP39-217ENST00000491659 CACNA1FO60840 1977 aa19.43■□□□□ 0.7
USP39-217ENST00000491659 ATP5J2-PTCD1G3V325 749 aa19.42■□□□□ 0.7
USP39-217ENST00000491659 PPEF1O14829 653 aaPredicted RBP19.42■□□□□ 0.7
USP39-217ENST00000491659 CC2D2BQ6DHV5 1058 aa19.42■□□□□ 0.7
USP39-217ENST00000491659 C16orf71Q8IYS4 520 aaPredicted RBP19.42■□□□□ 0.7
USP39-217ENST00000491659 GLTPD2A6NH11 291 aa19.41■□□□□ 0.7
USP39-217ENST00000491659 HCLS1P14317 486 aaPredicted RBP19.41■□□□□ 0.7
USP39-217ENST00000491659 OLFM4Q6UX06 510 aa19.41■□□□□ 0.7
USP39-217ENST00000491659 WDR90Q96KV7 1748 aa19.41■□□□□ 0.7
USP39-217ENST00000491659 DPY19L2Q6NUT2 758 aa19.4■□□□□ 0.7
USP39-217ENST00000491659 ZNF428Q96B54 188 aa19.4■□□□□ 0.7
USP39-217ENST00000491659 TOMM70O94826 608 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 GRIPAP1Q4V328 841 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 SYNE4Q8N205 404 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 MYD88Q99836 296 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 TMX4Q9H1E5 349 aaPredicted RBP19.39■□□□□ 0.69
USP39-217ENST00000491659 RRAGCQ9HB90 399 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 ABCC4O15439 1325 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 SNED1Q8TER0 1413 aa19.39■□□□□ 0.69
USP39-217ENST00000491659 TRIM28Q13263 835 aaKnown RBP19.38■□□□□ 0.69
USP39-217ENST00000491659 DDX46Q7L014 1031 aaKnown RBP19.38■□□□□ 0.69
USP39-217ENST00000491659 PSMD1Q99460 953 aa19.38■□□□□ 0.69
USP39-217ENST00000491659 MYH16Q9H6N6 1097 aa19.38■□□□□ 0.69
USP39-217ENST00000491659 ZNF277Q9NRM2 450 aaPredicted RBP19.38■□□□□ 0.69
USP39-217ENST00000491659 TAF1P21675 1872 aa19.37■□□□□ 0.69
USP39-217ENST00000491659 TCERG1O14776 1098 aaKnown RBP19.37■□□□□ 0.69
USP39-217ENST00000491659 FAM89AQ96GI7 184 aa19.37■□□□□ 0.69
USP39-217ENST00000491659 IARSP41252 1262 aaKnown RBP19.36■□□□□ 0.69
USP39-217ENST00000491659 EXOSC9Q06265 439 aaKnown RBP19.36■□□□□ 0.69
USP39-217ENST00000491659 METTL22Q9BUU2 404 aaPredicted RBP19.36■□□□□ 0.69
USP39-217ENST00000491659 MAP3K2Q9Y2U5 619 aa19.36■□□□□ 0.69
USP39-217ENST00000491659 LRRC37AA6NMS7 1700 aa19.36■□□□□ 0.69
USP39-217ENST00000491659 HSP90B1P14625 803 aaKnown RBP19.35■□□□□ 0.69
USP39-217ENST00000491659 RTL5Q5HYW3 569 aaPredicted RBP19.35■□□□□ 0.69
USP39-217ENST00000491659 KSR2Q6VAB6 950 aa19.35■□□□□ 0.69
USP39-217ENST00000491659 ZBTB38Q8NAP3 1195 aaPredicted RBP19.35■□□□□ 0.69
USP39-217ENST00000491659 CCDC191Q8NCU4 936 aa19.35■□□□□ 0.69
USP39-217ENST00000491659 RBM46Q8TBY0 533 aaKnown RBP19.35■□□□□ 0.69
USP39-217ENST00000491659 CWC25Q9NXE8 425 aaPredicted RBP19.35■□□□□ 0.69
USP39-217ENST00000491659 ATP6V0A2Q9Y487 856 aa19.35■□□□□ 0.69
USP39-217ENST00000491659 MYH3P11055 1940 aa19.34■□□□□ 0.69
USP39-217ENST00000491659 IRS4O14654 1257 aaPredicted RBP19.34■□□□□ 0.69
USP39-217ENST00000491659 BBOX1O75936 387 aa19.34■□□□□ 0.69
USP39-217ENST00000491659 SLC4A2P04920 1241 aa19.34■□□□□ 0.69
USP39-217ENST00000491659 VEGFAP15692 232 aaPredicted RBP19.34■□□□□ 0.69
USP39-217ENST00000491659 NEXNQ0ZGT2 675 aa19.34■□□□□ 0.69
USP39-217ENST00000491659 GRAPQ13588 217 aa19.34■□□□□ 0.69
USP39-217ENST00000491659 GRAPLQ8TC17 118 aaPredicted RBP19.34■□□□□ 0.69
USP39-217ENST00000491659 SCN4AP35499 1836 aa19.33■□□□□ 0.69
USP39-217ENST00000491659 PI4KAP2A4QPH2 592 aa19.33■□□□□ 0.68
USP39-217ENST00000491659 HSPA6P17066 643 aa19.33■□□□□ 0.68
USP39-217ENST00000491659 PI4KAP1Q8N8J0 262 aa19.33■□□□□ 0.68
USP39-217ENST00000491659 SPINK5Q9NQ38 1064 aaPredicted RBP19.33■□□□□ 0.68
USP39-217ENST00000491659 VAMP4O75379 141 aa19.32■□□□□ 0.68
USP39-217ENST00000491659 PCCAP05165 728 aaPredicted RBP19.32■□□□□ 0.68
USP39-217ENST00000491659 SF3B3Q15393 1217 aaKnown RBP19.32■□□□□ 0.68
USP39-217ENST00000491659 G2E3Q7L622 706 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms