RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 DDX19BQ9UMR2 479 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 NEURL1BA8MQ27 555 aa28.26■■■□□ 2.11
USF3-203ENST00000491165 USPL1Q5W0Q7 1092 aa28.26■■■□□ 2.11
USF3-203ENST00000491165 SSFA2P28290 1259 aa28.25■■■□□ 2.11
USF3-203ENST00000491165 TCIRG1Q13488 830 aa28.25■■■□□ 2.11
USF3-203ENST00000491165 IL27Q8NEV9 243 aa28.25■■■□□ 2.11
USF3-203ENST00000491165 NARFQ9UHQ1 456 aa28.25■■■□□ 2.11
USF3-203ENST00000491165 USP44Q9H0E7 712 aa28.25■■■□□ 2.11
USF3-203ENST00000491165 USP42Q9H9J4 1324 aaKnown RBP28.24■■■□□ 2.11
USF3-203ENST00000491165 A0A087WZG4 1122 aa28.24■■■□□ 2.11
USF3-203ENST00000491165 GPTP24298 496 aa28.24■■■□□ 2.11
USF3-203ENST00000491165 NEXNQ0ZGT2 675 aa28.24■■■□□ 2.11
USF3-203ENST00000491165 HDAC1Q13547 482 aaPredicted RBP28.23■■■□□ 2.11
USF3-203ENST00000491165 SLC15A2Q16348 729 aa28.23■■■□□ 2.11
USF3-203ENST00000491165 ISCA1Q9BUE6 129 aa28.23■■■□□ 2.11
USF3-203ENST00000491165 ZBTB40Q9NUA8 1239 aa28.23■■■□□ 2.11
USF3-203ENST00000491165 UBN2Q6ZU65 1347 aa28.23■■■□□ 2.11
USF3-203ENST00000491165 PNPLA7Q6ZV29 1317 aa28.23■■■□□ 2.11
USF3-203ENST00000491165 NBPF7P0C2Y1 421 aaPredicted RBP28.22■■■□□ 2.11
USF3-203ENST00000491165 ADRA2BP18089 450 aa28.22■■■□□ 2.11
USF3-203ENST00000491165 RFC4P35249 363 aa28.22■■■□□ 2.11
USF3-203ENST00000491165 COL23A1Q86Y22 540 aaPredicted RBP28.22■■■□□ 2.11
USF3-203ENST00000491165 C1orf115Q9H7X2 142 aa28.22■■■□□ 2.11
USF3-203ENST00000491165 ALDH1L1O75891 902 aa28.21■■■□□ 2.11
USF3-203ENST00000491165 GCKRQ14397 625 aa28.21■■■□□ 2.11
USF3-203ENST00000491165 JARID2Q92833 1246 aaPredicted RBP28.21■■■□□ 2.11
USF3-203ENST00000491165 ZPR1O75312 459 aa28.19■■■□□ 2.1
USF3-203ENST00000491165 ZNF34Q8IZ26 560 aa28.19■■■□□ 2.1
USF3-203ENST00000491165 QSER1Q2KHR3 1735 aa28.19■■■□□ 2.1
USF3-203ENST00000491165 TBC1D9BQ66K14 1250 aa28.18■■■□□ 2.1
USF3-203ENST00000491165 PDGFDQ9GZP0 370 aaPredicted RBP28.18■■■□□ 2.1
USF3-203ENST00000491165 HMGB2P26583 209 aaKnown RBP28.18■■■□□ 2.1
USF3-203ENST00000491165 NLRP10Q86W26 655 aa28.18■■■□□ 2.1
USF3-203ENST00000491165 GYS1P13807 737 aa28.17■■■□□ 2.1
USF3-203ENST00000491165 CLEC4GQ6UXB4 293 aa28.17■■■□□ 2.1
USF3-203ENST00000491165 STK32BQ9NY57 414 aa28.16■■■□□ 2.1
USF3-203ENST00000491165 GRM8O00222 908 aa28.16■■■□□ 2.1
USF3-203ENST00000491165 TRIM28Q13263 835 aaKnown RBP28.16■■■□□ 2.1
USF3-203ENST00000491165 CCDC191Q8NCU4 936 aa28.16■■■□□ 2.1
USF3-203ENST00000491165 CWC25Q9NXE8 425 aaPredicted RBP28.16■■■□□ 2.1
USF3-203ENST00000491165 NIP7Q9Y221 180 aaKnown RBP eCLIP28.16■■■□□ 2.1
USF3-203ENST00000491165 HSP90AB3PQ58FF7 597 aa28.15■■■□□ 2.1
USF3-203ENST00000491165 BICDL1Q6ZP65 573 aa28.15■■■□□ 2.1
USF3-203ENST00000491165 SLKQ9H2G2 1235 aaPredicted RBP28.15■■■□□ 2.1
USF3-203ENST00000491165 SYNE4Q8N205 404 aa28.15■■■□□ 2.1
USF3-203ENST00000491165 C9orf78Q9NZ63 289 aaPredicted RBP28.15■■■□□ 2.1
USF3-203ENST00000491165 GOLGB1Q14789 3259 aaKnown RBP28.15■■■□□ 2.1
USF3-203ENST00000491165 UTYO14607 1347 aa28.14■■■□□ 2.1
USF3-203ENST00000491165 ZNF652Q9Y2D9 606 aa28.14■■■□□ 2.1
USF3-203ENST00000491165 SRCAPQ6ZRS2 3230 aa28.14■■■□□ 2.09
USF3-203ENST00000491165 COL24A1Q17RW2 1714 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 CASP7P55210 303 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 IBTKQ9P2D0 1353 aaPredicted RBP28.13■■■□□ 2.09
USF3-203ENST00000491165 SUSD4Q5VX71 490 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 UBE3BQ7Z3V4 1068 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 SMC5Q8IY18 1101 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 TBC1D2Q9BYX2 928 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 ANTXR1Q9H6X2 564 aa28.13■■■□□ 2.09
USF3-203ENST00000491165 FAM177BA6PVY3 158 aa28.12■■■□□ 2.09
USF3-203ENST00000491165 KAZALD1Q96I82 304 aa28.12■■■□□ 2.09
USF3-203ENST00000491165 LRRFIP2Q9Y608 721 aaKnown RBP28.12■■■□□ 2.09
USF3-203ENST00000491165 UBTFL1P0CB47 393 aaPredicted RBP28.11■■■□□ 2.09
USF3-203ENST00000491165 FAM89AQ96GI7 184 aa28.11■■■□□ 2.09
USF3-203ENST00000491165 H7C1W4 665 aa28.1■■■□□ 2.09
USF3-203ENST00000491165 RGL2O15211 777 aa28.1■■■□□ 2.09
USF3-203ENST00000491165 GNAI3P08754 354 aa28.1■■■□□ 2.09
USF3-203ENST00000491165 SUCLG2Q96I99 432 aa28.1■■■□□ 2.09
USF3-203ENST00000491165 BRPF3Q9ULD4 1205 aa28.1■■■□□ 2.09
USF3-203ENST00000491165 NFIXQ14938 502 aa28.09■■■□□ 2.09
USF3-203ENST00000491165 FLAD1Q8NFF5 587 aa28.09■■■□□ 2.09
USF3-203ENST00000491165 EPHA10Q5JZY3 1008 aa28.08■■■□□ 2.09
USF3-203ENST00000491165 SIRT2Q8IXJ6 389 aa28.08■■■□□ 2.09
USF3-203ENST00000491165 NTSR2O95665 410 aa28.07■■■□□ 2.08
USF3-203ENST00000491165 C22orf23Q9BZE7 217 aa28.07■■■□□ 2.08
USF3-203ENST00000491165 GNAI2P04899 355 aa28.07■■■□□ 2.08
USF3-203ENST00000491165 ZBTB38Q8NAP3 1195 aaPredicted RBP28.07■■■□□ 2.08
USF3-203ENST00000491165 TRMT112Q9UI30 125 aaKnown RBP28.07■■■□□ 2.08
USF3-203ENST00000491165 NUTM1Q86Y26 1132 aa28.06■■■□□ 2.08
USF3-203ENST00000491165 PCCAP05165 728 aaPredicted RBP28.06■■■□□ 2.08
USF3-203ENST00000491165 MSL1Q68DK7 614 aa28.06■■■□□ 2.08
USF3-203ENST00000491165 SETDB2Q96T68 719 aa28.06■■■□□ 2.08
USF3-203ENST00000491165 DDX60Q8IY21 1712 aaKnown RBP28.05■■■□□ 2.08
USF3-203ENST00000491165 PARP10Q53GL7 1025 aa28.05■■■□□ 2.08
USF3-203ENST00000491165 CHMP4BQ9H444 224 aaKnown RBP28.05■■■□□ 2.08
USF3-203ENST00000491165 RTN4Q9NQC3 1192 aaKnown RBP28.05■■■□□ 2.08
USF3-203ENST00000491165 TM4SF1P30408 202 aa28.04■■■□□ 2.08
USF3-203ENST00000491165 MFAP1P55081 439 aaKnown RBP28.04■■■□□ 2.08
USF3-203ENST00000491165 CEP85Q6P2H3 762 aa28.04■■■□□ 2.08
USF3-203ENST00000491165 BICC1Q9H694 974 aaKnown RBP28.04■■■□□ 2.08
USF3-203ENST00000491165 CASZ1Q86V15 1759 aa28.04■■■□□ 2.08
USF3-203ENST00000491165 DDR1Q08345 913 aa28.03■■■□□ 2.08
USF3-203ENST00000491165 UTP14AQ9BVJ6 771 aaKnown RBP28.03■■■□□ 2.08
USF3-203ENST00000491165 PNMA6EA0A0J9YXQ4 647 aa28.02■■■□□ 2.08
USF3-203ENST00000491165 CCDC24Q8N4L8 307 aa28.02■■■□□ 2.08
USF3-203ENST00000491165 MYH3P11055 1940 aa28.02■■■□□ 2.08
USF3-203ENST00000491165 NUCB1Q02818 461 aa28.01■■■□□ 2.08
USF3-203ENST00000491165 CARMIL3Q8ND23 1372 aa28.01■■■□□ 2.07
USF3-203ENST00000491165 R3HDM1Q15032 1099 aaKnown RBP28.01■■■□□ 2.07
USF3-203ENST00000491165 PPP1R42Q7Z4L9 355 aa28.01■■■□□ 2.07
USF3-203ENST00000491165 ANKRD44Q8N8A2 993 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms