RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 TRAF1Q13077 416 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 CEP85LQ5SZL2 805 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 WDR78Q5VTH9 848 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SH3BP5O60239 455 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 FGFR1OPO95684 399 aaKnown RBP8.29□□□□□ -1.08
SYNE1-228ENST00000490135 ARHGAP25P42331 645 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 NAIF1Q69YI7 327 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-228ENST00000490135 ZNF354CQ86Y25 554 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 KIF2CQ99661 725 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 HYPKQ9NX55 129 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 RNF123Q5XPI4 1314 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 CAND2O75155 1236 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 TPD52P55327 224 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-228ENST00000490135 SNCBQ16143 134 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 ARMC9Q7Z3E5 817 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 ZNF287Q9HBT7 754 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 PSEN1P49768 467 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 MICAL1Q8TDZ2 1067 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 DDX12PQ92771 950 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-228ENST00000490135 USP47Q96K76 1375 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 APAF1O14727 1248 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 WHAMMP3Q1A5X7 153 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 NBPF10Q6P3W6 841 aaKnown RBP8.29□□□□□ -1.08
SYNE1-228ENST00000490135 FAM76AQ8TAV0 307 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 CUL5Q93034 780 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 SAAL1Q96ER3 474 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 CABS1Q96KC9 395 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 DNAI1Q9UI46 699 aa8.29□□□□□ -1.08
SYNE1-228ENST00000490135 KDM2BQ8NHM5 1336 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 KIF5CO60282 957 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 PAFAH1B1P43034 410 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 CETN1Q12798 172 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 ANKRD7Q92527 254 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 G3BP2Q9UN86 482 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 SMIM24O75264 130 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 NOP2P46087 812 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 MAP3K9P80192 1104 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 DDX46Q7L014 1031 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 TEX11Q8IYF3 940 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 PSMC4P43686 418 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 TADA2BQ86TJ2 420 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 IQCA1Q86XH1 822 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 DDX27Q96GQ7 796 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 NAA15Q9BXJ9 866 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 CCDC160A6NGH7 325 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 USO1O60763 962 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 GCFC2P16383 781 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 SLC8A1P32418 973 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 MXRA7P84157 204 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 PRPF31Q8WWY3 499 aaKnown RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 RUNDC1Q96C34 613 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 ANTXR1Q9H6X2 564 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 SLC52A1Q9NWF4 448 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 PLEKHH2Q8IVE3 1493 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 MX1P20591 662 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 EVCP57679 992 aa8.28□□□□□ -1.08
SYNE1-228ENST00000490135 CRACR2BQ8N4Y2 399 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-228ENST00000490135 RPSAP08865 295 aaKnown RBP8.27□□□□□ -1.08
SYNE1-228ENST00000490135 CFAP100Q494V2 611 aa8.27□□□□□ -1.08
SYNE1-228ENST00000490135 PLEKHO1Q53GL0 409 aaPredicted RBP8.27□□□□□ -1.08
SYNE1-228ENST00000490135 CTCFLQ8NI51 663 aaPredicted RBP8.27□□□□□ -1.08
SYNE1-228ENST00000490135 SPATA32Q96LK8 384 aa8.27□□□□□ -1.08
SYNE1-228ENST00000490135 CCDC18Q5T9S5 1454 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 MAP7D1Q3KQU3 841 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC38Q502W7 563 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 GIMAP6Q6P9H5 292 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 LMNTD2Q8IXW0 634 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 TPX2Q9ULW0 747 aaKnown RBP8.27□□□□□ -1.09
SYNE1-228ENST00000490135 ZMAT2Q96NC0 199 aaKnown RBP8.27□□□□□ -1.09
SYNE1-228ENST00000490135 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.27□□□□□ -1.09
SYNE1-228ENST00000490135 RAB34Q9BZG1 259 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 ZSWIM4Q9H7M6 989 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 GDPD2Q9HCC8 539 aa8.27□□□□□ -1.09
SYNE1-228ENST00000490135 PFDN1O60925 122 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 MFSD4BQ5TF39 518 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 LARP1BQ659C4 914 aaKnown RBP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC88BA6NC98 1476 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC6Q16204 474 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC83Q8IWF9 413 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 EXOC4Q96A65 974 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 IQCGQ9H095 443 aaKnown RBP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 ZNF215Q9UL58 517 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 SH3BP1Q9Y3L3 701 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 CREB3O43889 395 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 TMEM266Q2M3C6 531 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 ALS2CR12Q96Q35 445 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 PLEKHA4Q9H4M7 779 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 PYCARDQ9ULZ3 195 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 SRGAP3O43295 1099 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 HMOX1P09601 288 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 ELF1P32519 619 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 DNA2P51530 1060 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 HLTFQ14527 1009 aaKnown RBP eCLIP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 GAS2L2Q8NHY3 880 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 TBC1D22AQ8WUA7 517 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 BSDC1Q9NW68 430 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 BIN2Q9UBW5 565 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-228ENST00000490135 KIF4BQ2VIQ3 1234 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 TDRD12Q587J7 1177 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms