RNA–Protein interactions for RNA: ENST00000489611.5

COL9A1-208, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 2

Gene COL9A1, Length 1,940 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-208ENST00000489611 GLI3P10071 1580 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 MYD88Q99836 296 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 GZF1Q9H116 711 aaPredicted RBP18.06■□□□□ 0.48
COL9A1-208ENST00000489611 BRPF3Q9ULD4 1205 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 USP16Q9Y5T5 823 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 SHANK3Q9BYB0 1731 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 EXOC5O00471 708 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 RABL6Q3YEC7 729 aaPredicted RBP18.06■□□□□ 0.48
COL9A1-208ENST00000489611 TICAM2Q86XR7 235 aa18.06■□□□□ 0.48
COL9A1-208ENST00000489611 BCL9LQ86UU0 1499 aa18.05■□□□□ 0.48
COL9A1-208ENST00000489611 SASH1O94885 1247 aa18.05■□□□□ 0.48
COL9A1-208ENST00000489611 SNRKQ9NRH2 765 aa18.05■□□□□ 0.48
COL9A1-208ENST00000489611 THRAP3Q9Y2W1 955 aaKnown RBP18.05■□□□□ 0.48
COL9A1-208ENST00000489611 FNBP4Q8N3X1 1017 aaPredicted RBP18.04■□□□□ 0.48
COL9A1-208ENST00000489611 ZGPATQ8N5A5 531 aaKnown RBP18.04■□□□□ 0.48
COL9A1-208ENST00000489611 TM6SF1Q9BZW5 370 aa18.04■□□□□ 0.48
COL9A1-208ENST00000489611 PA2G4Q9UQ80 394 aaKnown RBP18.04■□□□□ 0.48
COL9A1-208ENST00000489611 CWC27Q6UX04 472 aaKnown RBP18.04■□□□□ 0.48
COL9A1-208ENST00000489611 KCNB2Q92953 911 aa18.04■□□□□ 0.48
COL9A1-208ENST00000489611 DDX49Q9Y6V7 483 aaKnown RBP18.04■□□□□ 0.48
COL9A1-208ENST00000489611 NWD2Q9ULI1 1742 aa18.04■□□□□ 0.48
COL9A1-208ENST00000489611 RFX7Q2KHR2 1363 aa18.03■□□□□ 0.48
COL9A1-208ENST00000489611 MAP4K4O95819 1239 aaPredicted RBP18.03■□□□□ 0.48
COL9A1-208ENST00000489611 MEX3CQ5U5Q3 659 aaKnown RBP18.03■□□□□ 0.48
COL9A1-208ENST00000489611 SNX14Q9Y5W7 946 aa18.03■□□□□ 0.48
COL9A1-208ENST00000489611 XRCC6P12956 609 aaKnown RBP eCLIP18.02■□□□□ 0.48
COL9A1-208ENST00000489611 PDIA4P13667 645 aaKnown RBP18.02■□□□□ 0.48
COL9A1-208ENST00000489611 EAF2Q96CJ1 260 aaPredicted RBP18.02■□□□□ 0.48
COL9A1-208ENST00000489611 USP21Q9UK80 565 aa18.02■□□□□ 0.48
COL9A1-208ENST00000489611 VPS72Q15906 364 aa18.02■□□□□ 0.47
COL9A1-208ENST00000489611 MCTP1Q6DN14 999 aa18.02■□□□□ 0.47
COL9A1-208ENST00000489611 CDCA7Q9BWT1 371 aaPredicted RBP18.02■□□□□ 0.47
COL9A1-208ENST00000489611 GRPEL1Q9HAV7 217 aa18.02■□□□□ 0.47
COL9A1-208ENST00000489611 BRD1O95696 1058 aa18.01■□□□□ 0.47
COL9A1-208ENST00000489611 ZKSCAN1P17029 563 aaPredicted RBP18.01■□□□□ 0.47
COL9A1-208ENST00000489611 DDB1Q16531 1140 aa18.01■□□□□ 0.47
COL9A1-208ENST00000489611 IL25Q9H293 177 aa18.01■□□□□ 0.47
COL9A1-208ENST00000489611 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.01■□□□□ 0.47
COL9A1-208ENST00000489611 NUP188Q5SRE5 1749 aa18.01■□□□□ 0.47
COL9A1-208ENST00000489611 FAM98CQ17RN3 349 aaKnown RBP18■□□□□ 0.47
COL9A1-208ENST00000489611 BARGINQ6ZT62 677 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 TTC14Q96N46 770 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 LIMCH1Q9UPQ0 1083 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 TNS2Q63HR2 1409 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 KCPQ6ZWJ8 1503 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 ZSCAN31Q96LW9 406 aaPredicted RBP18■□□□□ 0.47
COL9A1-208ENST00000489611 UPF3BQ9BZI7 483 aaKnown RBP18■□□□□ 0.47
COL9A1-208ENST00000489611 LMBRD1Q9NUN5 540 aa18■□□□□ 0.47
COL9A1-208ENST00000489611 WDR33Q9C0J8 1336 aaKnown RBP17.99■□□□□ 0.47
COL9A1-208ENST00000489611 A0A087WZG4 1122 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 ATP5JP18859 108 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 VPS53Q5VIR6 699 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 RNF20Q5VTR2 975 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 FAM43AQ8N2R8 423 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 ZDHHC9Q9Y397 364 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 CCDC171Q6TFL3 1326 aa17.99■□□□□ 0.47
COL9A1-208ENST00000489611 MBD3O95983 291 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 RFX5P48382 616 aaPredicted RBP17.98■□□□□ 0.47
COL9A1-208ENST00000489611 TEX13AQ9BXU3 409 aaPredicted RBP17.98■□□□□ 0.47
COL9A1-208ENST00000489611 SH2B1Q9NRF2 756 aaPredicted RBP17.98■□□□□ 0.47
COL9A1-208ENST00000489611 WNK3Q9BYP7 1800 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 H7C1W4 665 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 PSMA5P28066 241 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 PTPN12Q05209 780 aaKnown RBP17.98■□□□□ 0.47
COL9A1-208ENST00000489611 PKP1Q13835 747 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 UBE3BQ7Z3V4 1068 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 CCDC191Q8NCU4 936 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 ATG3Q9NT62 314 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 TMOD3Q9NYL9 352 aa17.98■□□□□ 0.47
COL9A1-208ENST00000489611 TOGARAM1Q9Y4F4 1720 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 CASP7P55210 303 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 ZNF445P59923 1031 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 NECTIN1Q15223 517 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 PIGBQ92521 554 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 MAP4K1Q92918 833 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 GPR108Q9NPR9 543 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 CWC25Q9NXE8 425 aaPredicted RBP17.97■□□□□ 0.47
COL9A1-208ENST00000489611 AFF2P51816 1311 aa17.97■□□□□ 0.47
COL9A1-208ENST00000489611 EPHA10Q5JZY3 1008 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 VSIG10Q8N0Z9 540 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 MARCH10Q8NA82 808 aaPredicted RBP17.96■□□□□ 0.47
COL9A1-208ENST00000489611 CCDC8Q9H0W5 538 aaPredicted RBP17.96■□□□□ 0.47
COL9A1-208ENST00000489611 SIL1Q9H173 461 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 ZSWIM6Q9HCJ5 1215 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 HMG20BQ9P0W2 317 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 CYP46A1Q9Y6A2 500 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 TNNI3KQ59H18 835 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 FSD1Q9BTV5 496 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 FPGT-TNNI3KV9GXZ4 949 aa17.96■□□□□ 0.47
COL9A1-208ENST00000489611 PTCD1O75127 700 aaKnown RBP17.95■□□□□ 0.46
COL9A1-208ENST00000489611 SYTL4Q96C24 671 aaPredicted RBP17.95■□□□□ 0.46
COL9A1-208ENST00000489611 NBPF26B4DH59 902 aa17.94■□□□□ 0.46
COL9A1-208ENST00000489611 CASTP20810 708 aaKnown RBP17.94■□□□□ 0.46
COL9A1-208ENST00000489611 ANKRD1Q15327 319 aa17.94■□□□□ 0.46
COL9A1-208ENST00000489611 NBPF14Q5TI25 921 aa17.94■□□□□ 0.46
COL9A1-208ENST00000489611 NBPF10Q6P3W6 841 aaKnown RBP17.94■□□□□ 0.46
COL9A1-208ENST00000489611 RASEFQ8IZ41 740 aa17.94■□□□□ 0.46
COL9A1-208ENST00000489611 NBPF15Q8N660 670 aa17.94■□□□□ 0.46
COL9A1-208ENST00000489611 ALDH8A1Q9H2A2 487 aaPredicted RBP17.94■□□□□ 0.46
COL9A1-208ENST00000489611 ASAP1Q9ULH1 1129 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms