RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 NEXNQ0ZGT2 675 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 TBC1D9BQ66K14 1250 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 BICDL1Q6ZP65 573 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 C1orf115Q9H7X2 142 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 CWF19L2Q2TBE0 894 aaKnown RBP19.87■□□□□ 0.77
SYNE1-227ENST00000489156 HSP90AB3PQ58FF7 597 aa19.87■□□□□ 0.77
SYNE1-227ENST00000489156 BEND3Q5T5X7 828 aa19.87■□□□□ 0.77
SYNE1-227ENST00000489156 SIRT2Q8IXJ6 389 aa19.87■□□□□ 0.77
SYNE1-227ENST00000489156 ANKRD44Q8N8A2 993 aa19.87■□□□□ 0.77
SYNE1-227ENST00000489156 IGKV5-2P06315 115 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 MSL1Q68DK7 614 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 NIP7Q9Y221 180 aaKnown RBP eCLIP19.86■□□□□ 0.77
SYNE1-227ENST00000489156 RGL2O15211 777 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 GNAI2P04899 355 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 ZNF34Q8IZ26 560 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 LINS1Q8NG48 757 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 ISCA1Q9BUE6 129 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 PDZRN3Q9UPQ7 1066 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 CASZ1Q86V15 1759 aa19.86■□□□□ 0.77
SYNE1-227ENST00000489156 IBTKQ9P2D0 1353 aaPredicted RBP19.85■□□□□ 0.77
SYNE1-227ENST00000489156 ALDH1L1O75891 902 aa19.85■□□□□ 0.77
SYNE1-227ENST00000489156 USP44Q9H0E7 712 aa19.85■□□□□ 0.77
SYNE1-227ENST00000489156 NFIXQ14938 502 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 CEP85Q6P2H3 762 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 NLGN1Q8N2Q7 840 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 UBN2Q6ZU65 1347 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 NEURL1BA8MQ27 555 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 SETDB2Q96T68 719 aa19.84■□□□□ 0.77
SYNE1-227ENST00000489156 FAM177BA6PVY3 158 aa19.83■□□□□ 0.76
SYNE1-227ENST00000489156 HMMRO75330 724 aa19.83■□□□□ 0.76
SYNE1-227ENST00000489156 NLRP10Q86W26 655 aa19.83■□□□□ 0.76
SYNE1-227ENST00000489156 SKAP1Q86WV1 359 aa19.83■□□□□ 0.76
SYNE1-227ENST00000489156 SLC16A10Q8TF71 515 aa19.83■□□□□ 0.76
SYNE1-227ENST00000489156 ZBTB7AO95365 584 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 NUCB1Q02818 461 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 TRIM28Q13263 835 aaKnown RBP19.82■□□□□ 0.76
SYNE1-227ENST00000489156 HDAC5Q9UQL6 1122 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 UBTFL1P0CB47 393 aaPredicted RBP19.82■□□□□ 0.76
SYNE1-227ENST00000489156 TM4SF1P30408 202 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 RGS3P49796 1198 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 CCDC191Q8NCU4 936 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 DCTPP1Q9H773 170 aa19.82■□□□□ 0.76
SYNE1-227ENST00000489156 SUSD4Q5VX71 490 aa19.81■□□□□ 0.76
SYNE1-227ENST00000489156 CWC25Q9NXE8 425 aaPredicted RBP19.81■□□□□ 0.76
SYNE1-227ENST00000489156 GCKRQ14397 625 aa19.8■□□□□ 0.76
SYNE1-227ENST00000489156 MMP10P09238 476 aa19.79■□□□□ 0.76
SYNE1-227ENST00000489156 PARP10Q53GL7 1025 aa19.79■□□□□ 0.76
SYNE1-227ENST00000489156 RTL5Q5HYW3 569 aaPredicted RBP19.79■□□□□ 0.76
SYNE1-227ENST00000489156 JARID2Q92833 1246 aaPredicted RBP19.79■□□□□ 0.76
SYNE1-227ENST00000489156 ATF5Q9Y2D1 282 aaPredicted RBP19.79■□□□□ 0.76
SYNE1-227ENST00000489156 COL24A1Q17RW2 1714 aa19.79■□□□□ 0.76
SYNE1-227ENST00000489156 DDR1Q08345 913 aa19.79■□□□□ 0.76
SYNE1-227ENST00000489156 CHD1LQ86WJ1 897 aa19.78■□□□□ 0.76
SYNE1-227ENST00000489156 MTFR1LQ9H019 292 aa19.78■□□□□ 0.76
SYNE1-227ENST00000489156 TRMT112Q9UI30 125 aaKnown RBP19.78■□□□□ 0.76
SYNE1-227ENST00000489156 CARMIL3Q8ND23 1372 aa19.78■□□□□ 0.76
SYNE1-227ENST00000489156 POLRMTO00411 1230 aaKnown RBP19.77■□□□□ 0.76
SYNE1-227ENST00000489156 ATP8B2P98198 1209 aa19.77■□□□□ 0.76
SYNE1-227ENST00000489156 PPP1R42Q7Z4L9 355 aa19.77■□□□□ 0.76
SYNE1-227ENST00000489156 SYNE4Q8N205 404 aa19.77■□□□□ 0.76
SYNE1-227ENST00000489156 UTP14AQ9BVJ6 771 aaKnown RBP19.77■□□□□ 0.76
SYNE1-227ENST00000489156 C9orf78Q9NZ63 289 aaPredicted RBP19.77■□□□□ 0.76
SYNE1-227ENST00000489156 RBM19Q9Y4C8 960 aaKnown RBP19.77■□□□□ 0.76
SYNE1-227ENST00000489156 SERPINB2P05120 415 aa19.77■□□□□ 0.76
SYNE1-227ENST00000489156 NBPF5PQ86XG9 351 aaPredicted RBP19.77■□□□□ 0.76
SYNE1-227ENST00000489156 FAM89AQ96GI7 184 aa19.77■□□□□ 0.76
SYNE1-227ENST00000489156 UTYO14607 1347 aa19.76■□□□□ 0.75
SYNE1-227ENST00000489156 GRM8O00222 908 aa19.76■□□□□ 0.75
SYNE1-227ENST00000489156 NTSR2O95665 410 aa19.76■□□□□ 0.75
SYNE1-227ENST00000489156 NBPF7P0C2Y1 421 aaPredicted RBP19.76■□□□□ 0.75
SYNE1-227ENST00000489156 PDE4AP27815 886 aa19.76■□□□□ 0.75
SYNE1-227ENST00000489156 NUTM1Q86Y26 1132 aa19.76■□□□□ 0.75
SYNE1-227ENST00000489156 LRRFIP2Q9Y608 721 aaKnown RBP19.76■□□□□ 0.75
SYNE1-227ENST00000489156 UBE3BQ7Z3V4 1068 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 ZBTB38Q8NAP3 1195 aaPredicted RBP19.75■□□□□ 0.75
SYNE1-227ENST00000489156 BACH2Q9BYV9 841 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 PARP3Q9Y6F1 533 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 H7C1W4 665 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 ANKRD45Q5TZF3 282 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 TPTE2Q6XPS3 522 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 CCDC24Q8N4L8 307 aa19.75■□□□□ 0.75
SYNE1-227ENST00000489156 NPHP1O15259 732 aa19.74■□□□□ 0.75
SYNE1-227ENST00000489156 PCCAP05165 728 aaPredicted RBP19.74■□□□□ 0.75
SYNE1-227ENST00000489156 GTF2E1P29083 439 aaPredicted RBP19.74■□□□□ 0.75
SYNE1-227ENST00000489156 NYXQ9GZU5 481 aa19.74■□□□□ 0.75
SYNE1-227ENST00000489156 FAM161AQ3B820 660 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 ERFEQ4G0M1 354 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 SH3TC1Q8TE82 1336 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 CASP7P55210 303 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 PRR5LQ6MZQ0 368 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 CNBD1Q8NA66 436 aa19.73■□□□□ 0.75
SYNE1-227ENST00000489156 NRXN2Q9P2S2 1712 aa19.72■□□□□ 0.75
SYNE1-227ENST00000489156 SSH3Q8TE77 659 aa19.72■□□□□ 0.75
SYNE1-227ENST00000489156 LNPKQ9C0E8 428 aa19.72■□□□□ 0.75
SYNE1-227ENST00000489156 MTX1Q13505 466 aa19.71■□□□□ 0.75
SYNE1-227ENST00000489156 ZBTB47Q9UFB7 747 aaPredicted RBP19.71■□□□□ 0.75
SYNE1-227ENST00000489156 DDX60Q8IY21 1712 aaKnown RBP19.71■□□□□ 0.75
SYNE1-227ENST00000489156 IRS4O14654 1257 aaPredicted RBP19.71■□□□□ 0.75
SYNE1-227ENST00000489156 HCLS1P14317 486 aaPredicted RBP19.71■□□□□ 0.75
SYNE1-227ENST00000489156 POLD1P28340 1107 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms