RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 SUSD4Q5VX71 490 aa17.92■□□□□ 0.46
SPTLC1-207ENST00000488921 C16orf71Q8IYS4 520 aaPredicted RBP17.92■□□□□ 0.46
SPTLC1-207ENST00000488921 MRS2Q9HD23 443 aa17.92■□□□□ 0.46
SPTLC1-207ENST00000488921 PRELPP51888 382 aa17.91■□□□□ 0.46
SPTLC1-207ENST00000488921 CCDC184Q52MB2 194 aa17.91■□□□□ 0.46
SPTLC1-207ENST00000488921 DUSP27Q5VZP5 1158 aa17.91■□□□□ 0.46
SPTLC1-207ENST00000488921 RPGRQ92834 1020 aaKnown RBP17.91■□□□□ 0.46
SPTLC1-207ENST00000488921 CHMP4AQ9BY43 222 aa17.91■□□□□ 0.46
SPTLC1-207ENST00000488921 WDR90Q96KV7 1748 aa17.9■□□□□ 0.46
SPTLC1-207ENST00000488921 UTP14AQ9BVJ6 771 aaKnown RBP17.9■□□□□ 0.46
SPTLC1-207ENST00000488921 HYPKQ9NX55 129 aa17.9■□□□□ 0.46
SPTLC1-207ENST00000488921 GLTPD2A6NH11 291 aa17.89■□□□□ 0.45
SPTLC1-207ENST00000488921 CCDC27Q2M243 656 aa17.89■□□□□ 0.45
SPTLC1-207ENST00000488921 RTKN2Q8IZC4 609 aa17.89■□□□□ 0.45
SPTLC1-207ENST00000488921 C7orf43Q8WVR3 580 aa17.89■□□□□ 0.45
SPTLC1-207ENST00000488921 HSPA6P17066 643 aa17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 TCIRG1Q13488 830 aa17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 DPY19L2Q6NUT2 758 aa17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 PLBD2Q8NHP8 589 aa17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 NLRP3Q96P20 1036 aa17.88■□□□□ 0.45
SPTLC1-207ENST00000488921 DDX60Q8IY21 1712 aaKnown RBP17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 HOXA10P31260 410 aaPredicted RBP17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 FKBP4Q02790 459 aaKnown RBP eCLIP17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 CC2D2BQ6DHV5 1058 aa17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 NLRP10Q86W26 655 aa17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 RBM46Q8TBY0 533 aaKnown RBP17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 RBM17Q96I25 401 aaKnown RBP17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 RRAGCQ9HB90 399 aa17.87■□□□□ 0.45
SPTLC1-207ENST00000488921 GRIPAP1Q4V328 841 aa17.86■□□□□ 0.45
SPTLC1-207ENST00000488921 ANKRD13DQ6ZTN6 518 aa17.86■□□□□ 0.45
SPTLC1-207ENST00000488921 CRAMP1Q96RY5 1269 aa17.86■□□□□ 0.45
SPTLC1-207ENST00000488921 SLC10A5Q5PT55 438 aa17.85■□□□□ 0.45
SPTLC1-207ENST00000488921 TRMT112Q9UI30 125 aaKnown RBP17.85■□□□□ 0.45
SPTLC1-207ENST00000488921 SCN4AP35499 1836 aa17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 SH3TC1Q8TE82 1336 aa17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 VEGFAP15692 232 aaPredicted RBP17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 GOLGA2Q08379 1002 aa17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 FSTL1Q12841 308 aa17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 CACNA1FO60840 1977 aa17.84■□□□□ 0.45
SPTLC1-207ENST00000488921 SNED1Q8TER0 1413 aa17.83■□□□□ 0.45
SPTLC1-207ENST00000488921 IL16Q14005 1332 aa17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 PPEF1O14829 653 aaPredicted RBP17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 CCDC30Q5VVM6 783 aa17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 WWC1Q8IX03 1113 aa17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 PSMD1Q99460 953 aa17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 TMX4Q9H1E5 349 aaPredicted RBP17.83■□□□□ 0.44
SPTLC1-207ENST00000488921 ELL2O00472 640 aaPredicted RBP17.82■□□□□ 0.44
SPTLC1-207ENST00000488921 C8orf58Q8NAV2 365 aa17.82■□□□□ 0.44
SPTLC1-207ENST00000488921 IARSP41252 1262 aaKnown RBP17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 APLP1P51693 650 aa17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 OLFM4Q6UX06 510 aa17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 C3orf67Q6ZVT6 689 aa17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 RIC3Q7Z5B4 369 aa17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 ISCA1Q9BUE6 129 aa17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 ZNF277Q9NRM2 450 aaPredicted RBP17.81■□□□□ 0.44
SPTLC1-207ENST00000488921 ABCC4O15439 1325 aa17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 CEP350Q5VT06 3117 aa17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 DDX58O95786 925 aaKnown RBP17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 SYNE4Q8N205 404 aa17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 SMC1BQ8NDV3 1235 aa17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 LRRC37AA6NMS7 1700 aa17.8■□□□□ 0.44
SPTLC1-207ENST00000488921 HCLS1P14317 486 aaPredicted RBP17.79■□□□□ 0.44
SPTLC1-207ENST00000488921 TRIM28Q13263 835 aaKnown RBP17.79■□□□□ 0.44
SPTLC1-207ENST00000488921 DDX46Q7L014 1031 aaKnown RBP17.79■□□□□ 0.44
SPTLC1-207ENST00000488921 TSR2Q969E8 191 aaKnown RBP17.79■□□□□ 0.44
SPTLC1-207ENST00000488921 STK31Q9BXU1 1019 aa17.79■□□□□ 0.44
SPTLC1-207ENST00000488921 TAF1P21675 1872 aa17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 ATP5J2-PTCD1G3V325 749 aa17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 HSP90B1P14625 803 aaKnown RBP17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 POTEDQ86YR6 584 aa17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 JDP2Q8WYK2 163 aa17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 PHAXQ9H814 394 aaKnown RBP17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 ATP6V0A2Q9Y487 856 aa17.78■□□□□ 0.44
SPTLC1-207ENST00000488921 IQCA1LA6NCM1 817 aa17.77■□□□□ 0.44
SPTLC1-207ENST00000488921 BBOX1O75936 387 aa17.77■□□□□ 0.44
SPTLC1-207ENST00000488921 TWISTNBQ3B726 338 aaPredicted RBP17.77■□□□□ 0.44
SPTLC1-207ENST00000488921 WDR63Q8IWG1 891 aa17.77■□□□□ 0.44
SPTLC1-207ENST00000488921 MYH3P11055 1940 aa17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 TCERG1O14776 1098 aaKnown RBP17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 DDNO94850 711 aaPredicted RBP17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 TMC4Q7Z404 712 aa17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 TSPYL6Q8N831 410 aa17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 L3MBTL3Q96JM7 780 aaPredicted RBP17.76■□□□□ 0.43
SPTLC1-207ENST00000488921 POTECB2RU33 542 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 FZD9O00144 591 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 GRAPQ13588 217 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 FAM9BQ8IZU0 186 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 CCDC191Q8NCU4 936 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 SUPT20HQ8NEM7 779 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 GRAPLQ8TC17 118 aaPredicted RBP17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 FAM89AQ96GI7 184 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 MYD88Q99836 296 aa17.75■□□□□ 0.43
SPTLC1-207ENST00000488921 FANCIQ9NVI1 1328 aa17.74■□□□□ 0.43
SPTLC1-207ENST00000488921 SP8Q8IXZ3 490 aa17.74■□□□□ 0.43
SPTLC1-207ENST00000488921 LARGE2Q8N3Y3 721 aa17.74■□□□□ 0.43
SPTLC1-207ENST00000488921 ZBTB38Q8NAP3 1195 aaPredicted RBP17.74■□□□□ 0.43
SPTLC1-207ENST00000488921 VPS33BQ9H267 617 aa17.74■□□□□ 0.43
SPTLC1-207ENST00000488921 ZNF541Q9H0D2 1346 aa17.73■□□□□ 0.43
SPTLC1-207ENST00000488921 IRS4O14654 1257 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms