RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 MYH3P11055 1940 aa13.41□□□□□ -0.26
USP11-209ENST00000488848 POLA2Q14181 598 aa13.4□□□□□ -0.26
USP11-209ENST00000488848 HLFQ16534 295 aa13.4□□□□□ -0.26
USP11-209ENST00000488848 FLAD1Q8NFF5 587 aa13.4□□□□□ -0.26
USP11-209ENST00000488848 GCC1Q96CN9 775 aa13.4□□□□□ -0.26
USP11-209ENST00000488848 BCL2L12Q9HB09 334 aa13.4□□□□□ -0.26
USP11-209ENST00000488848 UBN2Q6ZU65 1347 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 HMMRO75330 724 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 IGHDP01880 384 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 ATP8B2P98198 1209 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 AMIGO3Q86WK7 504 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 ZBTB38Q8NAP3 1195 aaPredicted RBP13.39□□□□□ -0.27
USP11-209ENST00000488848 DCTPP1Q9H773 170 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 C9orf78Q9NZ63 289 aaPredicted RBP13.39□□□□□ -0.27
USP11-209ENST00000488848 LRRFIP2Q9Y608 721 aaKnown RBP13.39□□□□□ -0.27
USP11-209ENST00000488848 DDX60Q8IY21 1712 aaKnown RBP13.39□□□□□ -0.27
USP11-209ENST00000488848 NRXN2Q9P2S2 1712 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 LRP5O75197 1615 aa13.39□□□□□ -0.27
USP11-209ENST00000488848 RTL9Q8NET4 1388 aa13.38□□□□□ -0.27
USP11-209ENST00000488848 ARHGEF1Q92888 912 aaKnown RBP13.38□□□□□ -0.27
USP11-209ENST00000488848 TBC1D2BQ9UPU7 963 aa13.38□□□□□ -0.27
USP11-209ENST00000488848 BAG6P46379 1132 aa13.37□□□□□ -0.27
USP11-209ENST00000488848 KCNQ4P56696 695 aa13.37□□□□□ -0.27
USP11-209ENST00000488848 TRAPPC3LQ5T215 181 aa13.37□□□□□ -0.27
USP11-209ENST00000488848 SUCLG2Q96I99 432 aa13.37□□□□□ -0.27
USP11-209ENST00000488848 NOP58Q9Y2X3 529 aaKnown RBP13.37□□□□□ -0.27
USP11-209ENST00000488848 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.36□□□□□ -0.27
USP11-209ENST00000488848 ATP5J2-PTCD1G3V325 749 aa13.36□□□□□ -0.27
USP11-209ENST00000488848 NTSR2O95665 410 aa13.36□□□□□ -0.27
USP11-209ENST00000488848 HSP90B1P14625 803 aaKnown RBP13.36□□□□□ -0.27
USP11-209ENST00000488848 ZNF827Q17R98 1081 aa13.36□□□□□ -0.27
USP11-209ENST00000488848 C1orf115Q9H7X2 142 aa13.36□□□□□ -0.27
USP11-209ENST00000488848 CSF1RP07333 972 aa13.35□□□□□ -0.27
USP11-209ENST00000488848 FOXO4P98177 505 aa13.35□□□□□ -0.27
USP11-209ENST00000488848 UBE3BQ7Z3V4 1068 aa13.35□□□□□ -0.27
USP11-209ENST00000488848 CARMIL3Q8ND23 1372 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 PNMA6EA0A0J9YXQ4 647 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 ZPR1O75312 459 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 SLC10A5Q5PT55 438 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 PPP1R42Q7Z4L9 355 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 BICC1Q9H694 974 aaKnown RBP13.34□□□□□ -0.27
USP11-209ENST00000488848 COPRSQ9NQ92 184 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 FBXO3Q9UK99 471 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 ZNF330Q9Y3S2 320 aaPredicted RBP13.34□□□□□ -0.27
USP11-209ENST00000488848 SH3TC1Q8TE82 1336 aa13.34□□□□□ -0.27
USP11-209ENST00000488848 CASZ1Q86V15 1759 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 GYS1P13807 737 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 RFC4P35249 363 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 RFX5P48382 616 aaPredicted RBP13.33□□□□□ -0.28
USP11-209ENST00000488848 NUCB1Q02818 461 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 EPHA10Q5JZY3 1008 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 USPL1Q5W0Q7 1092 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 UTP14AQ9BVJ6 771 aaKnown RBP13.33□□□□□ -0.28
USP11-209ENST00000488848 PNPLA7Q6ZV29 1317 aa13.33□□□□□ -0.28
USP11-209ENST00000488848 TM4SF1P30408 202 aa13.32□□□□□ -0.28
USP11-209ENST00000488848 SF3B2Q13435 895 aaKnown RBP13.32□□□□□ -0.28
USP11-209ENST00000488848 EZH2Q15910 746 aaKnown RBP13.32□□□□□ -0.28
USP11-209ENST00000488848 SLC15A2Q16348 729 aa13.32□□□□□ -0.28
USP11-209ENST00000488848 HSP90AB4PQ58FF6 505 aa13.32□□□□□ -0.28
USP11-209ENST00000488848 SUSD4Q5VX71 490 aa13.32□□□□□ -0.28
USP11-209ENST00000488848 NYXQ9GZU5 481 aa13.32□□□□□ -0.28
USP11-209ENST00000488848 NIP7Q9Y221 180 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP11-209ENST00000488848 SRGAP3O43295 1099 aa13.31□□□□□ -0.28
USP11-209ENST00000488848 RAB11FIP3O75154 756 aa13.31□□□□□ -0.28
USP11-209ENST00000488848 EN1Q05925 392 aaPredicted RBP13.31□□□□□ -0.28
USP11-209ENST00000488848 TBC1D9BQ66K14 1250 aa13.31□□□□□ -0.28
USP11-209ENST00000488848 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
USP11-209ENST00000488848 SRP68Q9UHB9 627 aaKnown RBP13.31□□□□□ -0.28
USP11-209ENST00000488848 TRMT112Q9UI30 125 aaKnown RBP13.31□□□□□ -0.28
USP11-209ENST00000488848 PDE8AO60658 829 aa13.3□□□□□ -0.28
USP11-209ENST00000488848 GPTP24298 496 aa13.3□□□□□ -0.28
USP11-209ENST00000488848 CTSWP56202 376 aa13.3□□□□□ -0.28
USP11-209ENST00000488848 SETDB2Q96T68 719 aa13.3□□□□□ -0.28
USP11-209ENST00000488848 IRS4O14654 1257 aaPredicted RBP13.29□□□□□ -0.28
USP11-209ENST00000488848 CIAO1O76071 339 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 PTPN12Q05209 780 aaKnown RBP13.29□□□□□ -0.28
USP11-209ENST00000488848 NFIXQ14938 502 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 SF3B3Q15393 1217 aaKnown RBP13.29□□□□□ -0.28
USP11-209ENST00000488848 COL23A1Q86Y22 540 aaPredicted RBP13.29□□□□□ -0.28
USP11-209ENST00000488848 ERC1Q8IUD2 1116 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 NLGN1Q8N2Q7 840 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 TTLL11Q8NHH1 800 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 FAM89AQ96GI7 184 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 TFCP2L1Q9NZI6 479 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 SALL3Q9BXA9 1300 aa13.29□□□□□ -0.28
USP11-209ENST00000488848 TNRC6CQ9HCJ0 1690 aaKnown RBP13.28□□□□□ -0.28
USP11-209ENST00000488848 KLRG2A4D1S0 409 aaPredicted RBP13.28□□□□□ -0.28
USP11-209ENST00000488848 LMBR1LQ6UX01 489 aa13.28□□□□□ -0.28
USP11-209ENST00000488848 CHD1LQ86WJ1 897 aa13.28□□□□□ -0.28
USP11-209ENST00000488848 STK32BQ9NY57 414 aa13.28□□□□□ -0.28
USP11-209ENST00000488848 PDZRN3Q9UPQ7 1066 aa13.28□□□□□ -0.28
USP11-209ENST00000488848 ABCC12Q96J65 1359 aa13.28□□□□□ -0.28
USP11-209ENST00000488848 TPTE2Q6XPS3 522 aa13.27□□□□□ -0.29
USP11-209ENST00000488848 SLC16A10Q8TF71 515 aa13.27□□□□□ -0.29
USP11-209ENST00000488848 UPF1Q92900 1129 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP11-209ENST00000488848 POLRMTO00411 1230 aaKnown RBP13.26□□□□□ -0.29
USP11-209ENST00000488848 PHF14O94880 888 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 CRY2Q49AN0 593 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 DEFB132Q7Z7B7 95 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 KIF1BPQ96EK5 621 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms