RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PCMTD2Q9NV79 361 aa8.42□□□□□ -1.06
SMC4-220ENST00000488017 TYRO3Q06418 890 aa8.41□□□□□ -1.06
SMC4-220ENST00000488017 SHISA2Q6UWI4 295 aa8.41□□□□□ -1.06
SMC4-220ENST00000488017 RAB44Q7Z6P3 723 aaPredicted RBP8.41□□□□□ -1.06
SMC4-220ENST00000488017 M0R2N6 131 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 ATP1A2P50993 1020 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 IRAK1P51617 712 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 RAC1P63000 192 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 WWC1Q8IX03 1113 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 HSH2DQ96JZ2 352 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 PHACTR1Q9C0D0 580 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 COG6Q9Y2V7 657 aa8.4□□□□□ -1.06
SMC4-220ENST00000488017 SFI1A8K8P3 1242 aa8.39□□□□□ -1.07
SMC4-220ENST00000488017 PLEKHM2Q8IWE5 1019 aa8.39□□□□□ -1.07
SMC4-220ENST00000488017 TPCN2Q8NHX9 752 aa8.39□□□□□ -1.07
SMC4-220ENST00000488017 SUSD3Q96L08 255 aa8.39□□□□□ -1.07
SMC4-220ENST00000488017 KRTAP4-2Q9BYR5 136 aa8.39□□□□□ -1.07
SMC4-220ENST00000488017 ZBTB7BO15156 539 aaPredicted RBP8.38□□□□□ -1.07
SMC4-220ENST00000488017 HIF1AQ16665 826 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 CCDC102BQ68D86 513 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 DEPDC4Q8N2C3 294 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 BHMTQ93088 406 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 UBE2OQ9C0C9 1292 aaKnown RBP8.38□□□□□ -1.07
SMC4-220ENST00000488017 TSPAN10Q9H1Z9 355 aaPredicted RBP8.38□□□□□ -1.07
SMC4-220ENST00000488017 USP21Q9UK80 565 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 HCN4Q9Y3Q4 1203 aa8.38□□□□□ -1.07
SMC4-220ENST00000488017 ZNF280CQ8ND82 737 aa8.37□□□□□ -1.07
SMC4-220ENST00000488017 SLC6A14Q9UN76 642 aa8.37□□□□□ -1.07
SMC4-220ENST00000488017 TAL1P17542 331 aaPredicted RBP8.36□□□□□ -1.07
SMC4-220ENST00000488017 SLC51AQ86UW1 340 aa8.36□□□□□ -1.07
SMC4-220ENST00000488017 JPH1Q9HDC5 661 aaPredicted RBP8.36□□□□□ -1.07
SMC4-220ENST00000488017 KIAA1024Q9UPX6 916 aa8.36□□□□□ -1.07
SMC4-220ENST00000488017 ILDR2Q71H61 639 aa8.35□□□□□ -1.07
SMC4-220ENST00000488017 STAG2Q8N3U4 1231 aa8.35□□□□□ -1.07
SMC4-220ENST00000488017 LARGE2Q8N3Y3 721 aa8.35□□□□□ -1.07
SMC4-220ENST00000488017 RNF114Q9Y508 228 aa8.35□□□□□ -1.07
SMC4-220ENST00000488017 CLDN10P78369 228 aa8.34□□□□□ -1.07
SMC4-220ENST00000488017 BTLAQ7Z6A9 289 aa8.34□□□□□ -1.07
SMC4-220ENST00000488017 FMR1NBQ8N0W7 255 aaPredicted RBP8.34□□□□□ -1.07
SMC4-220ENST00000488017 USP17L3A6NCW0 530 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 USP17L4A6NCW7 530 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 PALM3A6NDB9 673 aaPredicted RBP8.33□□□□□ -1.08
SMC4-220ENST00000488017 CD97P48960 835 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 AFF1P51825 1210 aaKnown RBP8.33□□□□□ -1.08
SMC4-220ENST00000488017 TBC1D8BQ0IIM8 1120 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 USP17L2Q6R6M4 530 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 USP17L1Q7RTZ2 530 aa8.33□□□□□ -1.08
SMC4-220ENST00000488017 PPP1R12BO60237 982 aaPredicted RBP8.32□□□□□ -1.08
SMC4-220ENST00000488017 SSTR4P31391 388 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 PSAPL1Q6NUJ1 521 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 ALDH16A1Q8IZ83 802 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 SIX5Q8N196 739 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 DTWD1Q8N5C7 304 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 GAS2L2Q8NHY3 880 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 NUDT8Q8WV74 236 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 WFDC12Q8WWY7 111 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 IGFLR1Q9H665 355 aa8.32□□□□□ -1.08
SMC4-220ENST00000488017 DNAJB12Q9NXW2 375 aaKnown RBP8.32□□□□□ -1.08
SMC4-220ENST00000488017 PCSK7Q16549 785 aa8.31□□□□□ -1.08
SMC4-220ENST00000488017 IER5Q5VY09 327 aa8.31□□□□□ -1.08
SMC4-220ENST00000488017 PRR23CQ6ZRP0 262 aa8.31□□□□□ -1.08
SMC4-220ENST00000488017 OGFOD1Q8N543 542 aa8.31□□□□□ -1.08
SMC4-220ENST00000488017 GSX2Q9BZM3 304 aa8.31□□□□□ -1.08
SMC4-220ENST00000488017 C21orf2O43822 256 aa8.3□□□□□ -1.08
SMC4-220ENST00000488017 RGS9O75916 674 aaPredicted RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 DMRTC2Q8IXT2 367 aaPredicted RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 PNMA5Q96PV4 448 aa8.3□□□□□ -1.08
SMC4-220ENST00000488017 C2orf49Q9BVC5 232 aaPredicted RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 RBM19Q9Y4C8 960 aaKnown RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 OAS3Q9Y6K5 1087 aaKnown RBP8.3□□□□□ -1.08
SMC4-220ENST00000488017 ATP9BO43861 1147 aa8.29□□□□□ -1.08
SMC4-220ENST00000488017 CCINQ13939 588 aa8.29□□□□□ -1.08
SMC4-220ENST00000488017 TSEN2Q8NCE0 465 aaKnown RBP8.29□□□□□ -1.08
SMC4-220ENST00000488017 NAGPAQ9UK23 515 aa8.29□□□□□ -1.08
SMC4-220ENST00000488017 ATAD2Q6PL18 1390 aa8.28□□□□□ -1.08
SMC4-220ENST00000488017 NOS3P29474 1203 aa8.28□□□□□ -1.08
SMC4-220ENST00000488017 IREB2P48200 963 aaKnown RBP8.28□□□□□ -1.08
SMC4-220ENST00000488017 MSL1Q68DK7 614 aa8.28□□□□□ -1.08
SMC4-220ENST00000488017 FRRS1LQ9P0K9 344 aa8.28□□□□□ -1.08
SMC4-220ENST00000488017 MKRN1Q9UHC7 482 aaKnown RBP8.28□□□□□ -1.08
SMC4-220ENST00000488017 RAD21O60216 631 aa8.27□□□□□ -1.09
SMC4-220ENST00000488017 DKK1O94907 266 aa8.27□□□□□ -1.09
SMC4-220ENST00000488017 FSTP19883 344 aa8.27□□□□□ -1.09
SMC4-220ENST00000488017 FBXO11Q86XK2 927 aa8.27□□□□□ -1.09
SMC4-220ENST00000488017 UCN2Q96RP3 112 aa8.27□□□□□ -1.09
SMC4-220ENST00000488017 TGFBR3LH3BV60 316 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 MAP3K6O95382 1288 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 NFKB1P19838 968 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 GP2P55259 537 aaKnown RBP8.26□□□□□ -1.09
SMC4-220ENST00000488017 RTN1Q16799 776 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 ADAMTS19Q8TE59 1207 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 POM121Q96HA1 1249 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 MEGF10Q96KG7 1140 aa8.26□□□□□ -1.09
SMC4-220ENST00000488017 KIAA1324LA8MWY0 1029 aaPredicted RBP8.25□□□□□ -1.09
SMC4-220ENST00000488017 EPB42P16452 691 aa8.25□□□□□ -1.09
SMC4-220ENST00000488017 FAM35AQ86V20 835 aa8.25□□□□□ -1.09
SMC4-220ENST00000488017 SCG3Q8WXD2 468 aaKnown RBP8.25□□□□□ -1.09
SMC4-220ENST00000488017 TTC9Q92623 222 aa8.25□□□□□ -1.09
SMC4-220ENST00000488017 C11orf16Q9NQ32 467 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms