RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 GNAI2P04899 355 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 GCKRQ14397 625 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 EZH2Q15910 746 aaKnown RBP13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 CWF19L2Q2TBE0 894 aaKnown RBP13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 MEIS3Q99687 375 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 ISCA1Q9BUE6 129 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 USP44Q9H0E7 712 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 ATF5Q9Y2D1 282 aaPredicted RBP13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 PHF14O94880 888 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 PARP10Q53GL7 1025 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 ARHGEF1Q92888 912 aaKnown RBP13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 AKT1S1Q96B36 256 aa13.25□□□□□ -0.29
HLA-DMB-261ENST00000487996 UTYO14607 1347 aa13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 ATP5J2-PTCD1G3V325 749 aa13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 HLFQ16534 295 aa13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 STK32BQ9NY57 414 aa13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 C4AP0C0L4 1744 aa13.24□□□□□ -0.29
HLA-DMB-261ENST00000487996 HSP90B1P14625 803 aaKnown RBP13.23□□□□□ -0.29
HLA-DMB-261ENST00000487996 RPAP2Q8IXW5 612 aaPredicted RBP13.23□□□□□ -0.29
HLA-DMB-261ENST00000487996 ZNF34Q8IZ26 560 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 PSDA5PKW4 1024 aaPredicted RBP13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 HMMRO75330 724 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 ZNF827Q17R98 1081 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 USPL1Q5W0Q7 1092 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 PPP1R42Q7Z4L9 355 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 NLRP10Q86W26 655 aa13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 RWDD1Q9H446 243 aaPredicted RBP13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 NIP7Q9Y221 180 aaKnown RBP eCLIP13.22□□□□□ -0.29
HLA-DMB-261ENST00000487996 QSER1Q2KHR3 1735 aa13.21□□□□□ -0.29
HLA-DMB-261ENST00000487996 PCCAP05165 728 aaPredicted RBP13.21□□□□□ -0.3
HLA-DMB-261ENST00000487996 NBPF7P0C2Y1 421 aaPredicted RBP13.21□□□□□ -0.3
HLA-DMB-261ENST00000487996 GPTP24298 496 aa13.21□□□□□ -0.3
HLA-DMB-261ENST00000487996 SLC15A2Q16348 729 aa13.21□□□□□ -0.3
HLA-DMB-261ENST00000487996 ZBTB38Q8NAP3 1195 aaPredicted RBP13.21□□□□□ -0.3
HLA-DMB-261ENST00000487996 H7C1W4 665 aa13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 HDAC1Q13547 482 aaPredicted RBP13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 UBE3BQ7Z3V4 1068 aa13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 SETDB2Q96T68 719 aa13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 PCDHB15Q9Y5E8 787 aa13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 LRRFIP2Q9Y608 721 aaKnown RBP13.2□□□□□ -0.3
HLA-DMB-261ENST00000487996 B4GALNT3Q6L9W6 998 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 AMIGO3Q86WK7 504 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 ANKRD44Q8N8A2 993 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 UTP14AQ9BVJ6 771 aaKnown RBP13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 NYXQ9GZU5 481 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 C1orf115Q9H7X2 142 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 SRP68Q9UHB9 627 aaKnown RBP13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 TRMT112Q9UI30 125 aaKnown RBP13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 TUBGCP6Q96RT7 1819 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 UBN2Q6ZU65 1347 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 CDHR2Q9BYE9 1310 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 CEP85Q6P2H3 762 aa13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 CENPQQ7L2Z9 268 aaPredicted RBP13.19□□□□□ -0.3
HLA-DMB-261ENST00000487996 CARMIL3Q8ND23 1372 aa13.18□□□□□ -0.3
HLA-DMB-261ENST00000487996 SH3TC1Q8TE82 1336 aa13.18□□□□□ -0.3
HLA-DMB-261ENST00000487996 POLA2Q14181 598 aa13.18□□□□□ -0.3
HLA-DMB-261ENST00000487996 NLGN1Q8N2Q7 840 aa13.18□□□□□ -0.3
HLA-DMB-261ENST00000487996 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
HLA-DMB-261ENST00000487996 PNPLA7Q6ZV29 1317 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 GYS1P13807 737 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 CASP7P55210 303 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 MTX1Q13505 466 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 TBC1D9BQ66K14 1250 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 SMIM5Q71RC9 77 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 ANO8Q9HCE9 1232 aaPredicted RBP13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 COL24A1Q17RW2 1714 aa13.17□□□□□ -0.3
HLA-DMB-261ENST00000487996 ATP8B2P98198 1209 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 TPTE2Q6XPS3 522 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 COL23A1Q86Y22 540 aaPredicted RBP13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 SUCLG2Q96I99 432 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 PLA2G12BQ9BX93 195 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 GTF2E1P29083 439 aaPredicted RBP13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 SUSD4Q5VX71 490 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 BICDL1Q6ZP65 573 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 NBPF5PQ86XG9 351 aaPredicted RBP13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 FAM89AQ96GI7 184 aa13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 BICC1Q9H694 974 aaKnown RBP13.16□□□□□ -0.3
HLA-DMB-261ENST00000487996 MYH3P11055 1940 aa13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 IRS4O14654 1257 aaPredicted RBP13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 NPHP1O15259 732 aa13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 SRGAP3O43295 1099 aa13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 NTSR2O95665 410 aa13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 RABL6Q3YEC7 729 aaPredicted RBP13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 GCC1Q96CN9 775 aa13.15□□□□□ -0.3
HLA-DMB-261ENST00000487996 PDE8AO60658 829 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 NFIXQ14938 502 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 R3HDM1Q15032 1099 aaKnown RBP13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 RTL5Q5HYW3 569 aaPredicted RBP13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 SLC16A10Q8TF71 515 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 KDM2BQ8NHM5 1336 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 LRP5O75197 1615 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 LAMB2P55268 1798 aa13.14□□□□□ -0.31
HLA-DMB-261ENST00000487996 HSP90AB4PQ58FF6 505 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 SIRT2Q8IXJ6 389 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 SSH3Q8TE77 659 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 KAZALD1Q96I82 304 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 FAM177BA6PVY3 158 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 IGHDP01880 384 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms