RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 DZIP3Q86Y13 1208 aaKnown RBP11.66□□□□□ -0.54
SF3B1-211ENST00000487698 STAP2Q9UGK3 403 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 PA2G4Q9UQ80 394 aaKnown RBP11.66□□□□□ -0.54
SF3B1-211ENST00000487698 LAMB2P55268 1798 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 MX1P20591 662 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 ANP32AP39687 249 aaKnown RBP11.65□□□□□ -0.54
SF3B1-211ENST00000487698 ERC1Q8IUD2 1116 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 LINC00116Q8NCU8 138 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 AOX1Q06278 1338 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 CNTNAP4Q9C0A0 1308 aa11.65□□□□□ -0.54
SF3B1-211ENST00000487698 PCCAP05165 728 aaPredicted RBP11.65□□□□□ -0.55
SF3B1-211ENST00000487698 IL1RAPL2Q9NP60 686 aa11.65□□□□□ -0.55
SF3B1-211ENST00000487698 COPRSQ9NQ92 184 aa11.65□□□□□ -0.55
SF3B1-211ENST00000487698 NLRP10Q86W26 655 aa11.64□□□□□ -0.55
SF3B1-211ENST00000487698 TBC1D2BQ9UPU7 963 aa11.64□□□□□ -0.55
SF3B1-211ENST00000487698 CDHR2Q9BYE9 1310 aa11.64□□□□□ -0.55
SF3B1-211ENST00000487698 C4BP0C0L5 1744 aa11.64□□□□□ -0.55
SF3B1-211ENST00000487698 PTPN12Q05209 780 aaKnown RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 LMBR1LQ6UX01 489 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 NPM2Q86SE8 214 aaKnown RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 ZNF34Q8IZ26 560 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 ZBTB38Q8NAP3 1195 aaPredicted RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 PLA2G12BQ9BX93 195 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 USP42Q9H9J4 1324 aaKnown RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 C4AP0C0L4 1744 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 SASH1O94885 1247 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 CAMTA2O94983 1202 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 OS9Q13438 667 aaPredicted RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 UBN2Q6ZU65 1347 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 DDX60Q8IY21 1712 aaKnown RBP11.63□□□□□ -0.55
SF3B1-211ENST00000487698 BCL11AQ9H165 835 aa11.63□□□□□ -0.55
SF3B1-211ENST00000487698 CDC45O75419 566 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 SDSP20132 328 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 RTL5Q5HYW3 569 aaPredicted RBP11.62□□□□□ -0.55
SF3B1-211ENST00000487698 TBC1D9Q6ZT07 1266 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 KLHDC4Q8TBB5 520 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 ARXQ96QS3 562 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 CASZ1Q86V15 1759 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 GPTP24298 496 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 G3BP1Q13283 466 aaKnown RBP eCLIP11.62□□□□□ -0.55
SF3B1-211ENST00000487698 RC3H1Q5TC82 1133 aaKnown RBP11.62□□□□□ -0.55
SF3B1-211ENST00000487698 TSHZ3Q63HK5 1081 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 ZNF772Q68DY9 489 aaPredicted RBP11.62□□□□□ -0.55
SF3B1-211ENST00000487698 NUTM1Q86Y26 1132 aa11.62□□□□□ -0.55
SF3B1-211ENST00000487698 BCL11BQ9C0K0 894 aaPredicted RBP11.62□□□□□ -0.55
SF3B1-211ENST00000487698 COL24A1Q17RW2 1714 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 EP400Q96L91 3159 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 RGL2O15211 777 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 KCNQ4P56696 695 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 CLASRPQ8N2M8 674 aaKnown RBP11.61□□□□□ -0.55
SF3B1-211ENST00000487698 PI4K2BQ8TCG2 481 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 FAM89AQ96GI7 184 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 TBC1D32Q96NH3 1257 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-211ENST00000487698 UBR3Q6ZT12 1888 aa11.61□□□□□ -0.55
SF3B1-211ENST00000487698 RBM6P78332 1123 aaKnown RBP11.6□□□□□ -0.55
SF3B1-211ENST00000487698 KRT27Q7Z3Y8 459 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 IPO9Q96P70 1041 aaKnown RBP11.6□□□□□ -0.55
SF3B1-211ENST00000487698 SIL1Q9H173 461 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 CCNL1Q9UK58 526 aaPredicted RBP11.6□□□□□ -0.55
SF3B1-211ENST00000487698 LRP5O75197 1615 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 TTC41PQ6P2S7 1318 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 CSF1RP07333 972 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 FAM196AQ6ZSG2 479 aa11.6□□□□□ -0.55
SF3B1-211ENST00000487698 UPF2Q9HAU5 1272 aaKnown RBP11.6□□□□□ -0.55
SF3B1-211ENST00000487698 RPS6KA4O75676 772 aa11.59□□□□□ -0.55
SF3B1-211ENST00000487698 MFAP1P55081 439 aaKnown RBP11.59□□□□□ -0.55
SF3B1-211ENST00000487698 CLEC4GQ6UXB4 293 aa11.59□□□□□ -0.55
SF3B1-211ENST00000487698 SYNE4Q8N205 404 aa11.59□□□□□ -0.55
SF3B1-211ENST00000487698 EAF2Q96CJ1 260 aaPredicted RBP11.59□□□□□ -0.55
SF3B1-211ENST00000487698 TRMT112Q9UI30 125 aaKnown RBP11.59□□□□□ -0.55
SF3B1-211ENST00000487698 PARP10Q53GL7 1025 aa11.58□□□□□ -0.56
SF3B1-211ENST00000487698 ATG9AQ7Z3C6 839 aa11.58□□□□□ -0.56
SF3B1-211ENST00000487698 AACSQ86V21 672 aa11.58□□□□□ -0.56
SF3B1-211ENST00000487698 CHMP3Q9Y3E7 222 aa11.58□□□□□ -0.56
SF3B1-211ENST00000487698 MSH5O43196 834 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 AK7Q96M32 723 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 ZNF652Q9Y2D9 606 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 IRS4O14654 1257 aaPredicted RBP11.57□□□□□ -0.56
SF3B1-211ENST00000487698 CIAO1O76071 339 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 IFIT2P09913 472 aaKnown RBP11.57□□□□□ -0.56
SF3B1-211ENST00000487698 CTSWP56202 376 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 TFCP2Q12800 502 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 SUSD4Q5VX71 490 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 TTLL11Q8NHH1 800 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 ECHDC1Q9NTX5 307 aa11.57□□□□□ -0.56
SF3B1-211ENST00000487698 EYA2O00167 538 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 PDE8AO60658 829 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 GLRX3O76003 335 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 NTSR2O95665 410 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 C22orf23Q9BZE7 217 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 BCL2L12Q9HB09 334 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 LRRC4BQ9NT99 713 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 TLR7Q9NYK1 1049 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 NARFQ9UHQ1 456 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 TNS1Q9HBL0 1735 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 SH3TC1Q8TE82 1336 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 ZNF609O15014 1411 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 SPEF2Q9C093 1822 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms