RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 CCDC97Q96F63 343 aaPredicted RBP7.28□□□□□ -1.24
VPS50-217ENST00000485140 MYO19Q96H55 970 aa7.28□□□□□ -1.24
VPS50-217ENST00000485140 ZMYND15Q9H091 742 aa7.28□□□□□ -1.24
VPS50-217ENST00000485140 SERPINA10Q9UK55 444 aa7.28□□□□□ -1.24
VPS50-217ENST00000485140 ACIN1Q9UKV3 1341 aaKnown RBP7.27□□□□□ -1.24
VPS50-217ENST00000485140 SNRPNP63162 240 aaKnown RBP7.27□□□□□ -1.25
VPS50-217ENST00000485140 PRRT3Q5FWE3 981 aa7.27□□□□□ -1.25
VPS50-217ENST00000485140 COL26A1Q96A83 441 aa7.27□□□□□ -1.25
VPS50-217ENST00000485140 PNMA5Q96PV4 448 aa7.27□□□□□ -1.25
VPS50-217ENST00000485140 SPATA31C1P0DKV0 1188 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 PLA2G4EQ3MJ16 856 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 ARXQ96QS3 562 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 NACC1Q96RE7 527 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 STRN4Q9NRL3 753 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 FAM13BQ9NYF5 915 aa7.26□□□□□ -1.25
VPS50-217ENST00000485140 NOVA2Q9UNW9 492 aaKnown RBP7.26□□□□□ -1.25
VPS50-217ENST00000485140 ADH7P40394 386 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 ARSDP51689 593 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 SFSWAPQ12872 951 aaKnown RBP7.25□□□□□ -1.25
VPS50-217ENST00000485140 GRIN2CQ14957 1233 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 SH3PXD2AQ5TCZ1 1133 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 ERICH6Q7L0X2 663 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 NGLY1Q96IV0 654 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 HSH2DQ96JZ2 352 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 MDFIQ99750 246 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 KLF15Q9UIH9 416 aa7.25□□□□□ -1.25
VPS50-217ENST00000485140 PTCD1O75127 700 aaKnown RBP7.24□□□□□ -1.25
VPS50-217ENST00000485140 ATG7O95352 703 aa7.24□□□□□ -1.25
VPS50-217ENST00000485140 CCINQ13939 588 aa7.24□□□□□ -1.25
VPS50-217ENST00000485140 C11orf91Q3C1V1 193 aa7.24□□□□□ -1.25
VPS50-217ENST00000485140 KRTAP4-8Q9BYQ9 185 aa7.24□□□□□ -1.25
VPS50-217ENST00000485140 MAP3K6O95382 1288 aa7.23□□□□□ -1.25
VPS50-217ENST00000485140 HOXB4P17483 251 aaPredicted RBP7.23□□□□□ -1.25
VPS50-217ENST00000485140 BHMTQ93088 406 aa7.22□□□□□ -1.25
VPS50-217ENST00000485140 PBXIP1Q96AQ6 731 aa7.22□□□□□ -1.25
VPS50-217ENST00000485140 SLC30A3Q99726 388 aa7.22□□□□□ -1.25
VPS50-217ENST00000485140 SPOCK3Q9BQ16 436 aa7.22□□□□□ -1.25
VPS50-217ENST00000485140 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.22□□□□□ -1.25
VPS50-217ENST00000485140 LILRB5O75023 590 aa7.21□□□□□ -1.26
VPS50-217ENST00000485140 APBA3O96018 575 aa7.21□□□□□ -1.26
VPS50-217ENST00000485140 ZNF280CQ8ND82 737 aa7.21□□□□□ -1.26
VPS50-217ENST00000485140 DCAF11Q8TEB1 546 aa7.21□□□□□ -1.26
VPS50-217ENST00000485140 UBE2OQ9C0C9 1292 aaKnown RBP7.21□□□□□ -1.26
VPS50-217ENST00000485140 M0R082 166 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 COL8A1P27658 744 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 IDH3AP50213 366 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 TRIM28Q13263 835 aaKnown RBP7.2□□□□□ -1.26
VPS50-217ENST00000485140 ZNF417Q8TAU3 575 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 ZNF587Q96SQ5 575 aaPredicted RBP7.2□□□□□ -1.26
VPS50-217ENST00000485140 PLVAPQ9BX97 442 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 DMGDHQ9UI17 866 aaKnown RBP7.2□□□□□ -1.26
VPS50-217ENST00000485140 HCN2Q9UL51 889 aa7.2□□□□□ -1.26
VPS50-217ENST00000485140 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.19□□□□□ -1.26
VPS50-217ENST00000485140 MICAL2O94851 1124 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 BRD2P25440 801 aaKnown RBP7.19□□□□□ -1.26
VPS50-217ENST00000485140 INPP5BP32019 993 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 RAC1P63000 192 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 DGKZQ13574 1117 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 MICALL1Q8N3F8 863 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 IFT43Q96FT9 208 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 GSX2Q9BZM3 304 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 FRRS1LQ9P0K9 344 aa7.19□□□□□ -1.26
VPS50-217ENST00000485140 KRBA1A5PL33 1030 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 PPP1R15AO75807 674 aaPredicted RBP7.18□□□□□ -1.26
VPS50-217ENST00000485140 EGFRP00533 1210 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 C16orf46Q6P387 395 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 CACTIN-AS1Q8N1I8 211 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 CLP1Q92989 425 aaKnown RBP7.18□□□□□ -1.26
VPS50-217ENST00000485140 QTRT2Q9H974 415 aaKnown RBP7.18□□□□□ -1.26
VPS50-217ENST00000485140 SLC6A14Q9UN76 642 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 GTF3C3Q9Y5Q9 886 aa7.18□□□□□ -1.26
VPS50-217ENST00000485140 PROCP04070 461 aa7.17□□□□□ -1.26
VPS50-217ENST00000485140 RPLP1P05386 114 aaKnown RBP7.17□□□□□ -1.26
VPS50-217ENST00000485140 DTWD1Q8N5C7 304 aa7.17□□□□□ -1.26
VPS50-217ENST00000485140 ABTB2Q8N961 1025 aa7.17□□□□□ -1.26
VPS50-217ENST00000485140 TTC9Q92623 222 aa7.17□□□□□ -1.26
VPS50-217ENST00000485140 NFKB1P19838 968 aa7.16□□□□□ -1.26
VPS50-217ENST00000485140 NRG1Q02297 640 aaPredicted RBP7.16□□□□□ -1.26
VPS50-217ENST00000485140 TRIM11Q96F44 468 aa7.16□□□□□ -1.26
VPS50-217ENST00000485140 RBSNQ9H1K0 784 aa7.16□□□□□ -1.26
VPS50-217ENST00000485140 SUV39H2Q9H5I1 410 aa7.16□□□□□ -1.26
VPS50-217ENST00000485140 FNDC3AQ9Y2H6 1198 aaKnown RBP7.16□□□□□ -1.26
VPS50-217ENST00000485140 C9orf172C9J069 976 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 RGS9O75916 674 aaPredicted RBP7.15□□□□□ -1.26
VPS50-217ENST00000485140 ALBP02768 609 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 NRLP54845 237 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 GPLD1P80108 840 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 C20orf204Q6ZNR8 217 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 TRPM4Q8TD43 1214 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 PIK3R5Q8WYR1 880 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 KRTAP9-2Q9BYQ4 174 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 SRA1Q9HD15 236 aaKnown RBP7.15□□□□□ -1.26
VPS50-217ENST00000485140 DNAJB12Q9NXW2 375 aaKnown RBP7.15□□□□□ -1.26
VPS50-217ENST00000485140 KLK14Q9P0G3 267 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 CXXC1Q9P0U4 656 aaPredicted RBP7.15□□□□□ -1.26
VPS50-217ENST00000485140 MTMR7Q9Y216 660 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 BCS1LQ9Y276 419 aa7.15□□□□□ -1.26
VPS50-217ENST00000485140 KRTAP9-6A0A140TA67 174 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 K7ELQ4 463 aaPredicted RBP7.14□□□□□ -1.27
VPS50-217ENST00000485140 RARAP10276 462 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms