RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 ST8SIA5O15466 376 aa12.53□□□□□ -0.4
MCF2-207ENST00000483690 NIF3L1Q9GZT8 377 aa12.53□□□□□ -0.4
MCF2-207ENST00000483690 AAASQ9NRG9 546 aa12.53□□□□□ -0.4
MCF2-207ENST00000483690 INPP5BP32019 993 aa12.52□□□□□ -0.41
MCF2-207ENST00000483690 TAGLNQ01995 201 aaKnown RBP12.52□□□□□ -0.41
MCF2-207ENST00000483690 FGD1P98174 961 aa12.51□□□□□ -0.41
MCF2-207ENST00000483690 EPB42P16452 691 aa12.5□□□□□ -0.41
MCF2-207ENST00000483690 EFHC2Q5JST6 749 aa12.5□□□□□ -0.41
MCF2-207ENST00000483690 NLRP8Q86W28 1048 aa12.5□□□□□ -0.41
MCF2-207ENST00000483690 CEP63Q96MT8 703 aa12.5□□□□□ -0.41
MCF2-207ENST00000483690 GGNBP2Q9H3C7 697 aa12.5□□□□□ -0.41
MCF2-207ENST00000483690 FNDC3AQ9Y2H6 1198 aaKnown RBP12.5□□□□□ -0.41
MCF2-207ENST00000483690 RTCBQ9Y3I0 505 aaKnown RBP12.5□□□□□ -0.41
MCF2-207ENST00000483690 LDHBP07195 334 aaKnown RBP12.49□□□□□ -0.41
MCF2-207ENST00000483690 ATP2B2Q01814 1243 aa12.49□□□□□ -0.41
MCF2-207ENST00000483690 CMTR1Q8N1G2 835 aaKnown RBP12.49□□□□□ -0.41
MCF2-207ENST00000483690 KIAA1522Q9P206 1035 aaPredicted RBP12.49□□□□□ -0.41
MCF2-207ENST00000483690 USP20Q9Y2K6 914 aa12.49□□□□□ -0.41
MCF2-207ENST00000483690 SENP3-EIF4A1A0A087X0R7 540 aa12.48□□□□□ -0.41
MCF2-207ENST00000483690 NEFLP07196 543 aa12.48□□□□□ -0.41
MCF2-207ENST00000483690 TYRO3Q06418 890 aa12.48□□□□□ -0.41
MCF2-207ENST00000483690 A6NHS1 94 aa12.47□□□□□ -0.41
MCF2-207ENST00000483690 PNMA6FA0A0J9YX94 578 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 SOBPA7XYQ1 873 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 PRPF40AO75400 957 aaKnown RBP12.46□□□□□ -0.41
MCF2-207ENST00000483690 LBRQ14739 615 aaKnown RBP12.46□□□□□ -0.41
MCF2-207ENST00000483690 SAMD5Q5TGI4 173 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 RIPOR1Q6ZS17 1223 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 SENP2Q9HC62 589 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 DACH1Q9UI36 760 aa12.46□□□□□ -0.41
MCF2-207ENST00000483690 UBAP1LF5GYI3 381 aa12.45□□□□□ -0.42
MCF2-207ENST00000483690 PTSQ03393 145 aa12.45□□□□□ -0.42
MCF2-207ENST00000483690 ENOX2Q16206 610 aaKnown RBP12.45□□□□□ -0.42
MCF2-207ENST00000483690 CSRNP1Q96S65 589 aa12.45□□□□□ -0.42
MCF2-207ENST00000483690 BRD7Q9NPI1 651 aa12.45□□□□□ -0.42
MCF2-207ENST00000483690 TRIP4Q15650 581 aaPredicted RBP12.44□□□□□ -0.42
MCF2-207ENST00000483690 FIGNL1Q6PIW4 674 aa12.44□□□□□ -0.42
MCF2-207ENST00000483690 ZNF438Q7Z4V0 828 aa12.44□□□□□ -0.42
MCF2-207ENST00000483690 KIFC2Q96AC6 838 aa12.44□□□□□ -0.42
MCF2-207ENST00000483690 KCNMB2Q9Y691 235 aa12.44□□□□□ -0.42
MCF2-207ENST00000483690 ORC1Q13415 861 aa12.43□□□□□ -0.42
MCF2-207ENST00000483690 ALG1LQ6GMV1 187 aa12.43□□□□□ -0.42
MCF2-207ENST00000483690 PDE12Q6L8Q7 609 aaKnown RBP12.43□□□□□ -0.42
MCF2-207ENST00000483690 SLC35F4A4IF30 521 aa12.42□□□□□ -0.42
MCF2-207ENST00000483690 VAMP1P23763 118 aa12.42□□□□□ -0.42
MCF2-207ENST00000483690 XPCQ01831 940 aaPredicted RBP12.42□□□□□ -0.42
MCF2-207ENST00000483690 XKR5Q6UX68 686 aa12.42□□□□□ -0.42
MCF2-207ENST00000483690 WWC3Q9ULE0 1092 aa12.42□□□□□ -0.42
MCF2-207ENST00000483690 H7C1W4 665 aa12.41□□□□□ -0.42
MCF2-207ENST00000483690 EIF1AYO14602 144 aaKnown RBP12.41□□□□□ -0.42
MCF2-207ENST00000483690 XYLBO75191 536 aa12.41□□□□□ -0.42
MCF2-207ENST00000483690 DUSP9Q99956 384 aaKnown RBP12.41□□□□□ -0.42
MCF2-207ENST00000483690 ZCCHC2Q9C0B9 1178 aaKnown RBP12.41□□□□□ -0.42
MCF2-207ENST00000483690 DNAJC25Q9H1X3 360 aa12.41□□□□□ -0.42
MCF2-207ENST00000483690 ATXN7O15265 892 aaPredicted RBP12.4□□□□□ -0.42
MCF2-207ENST00000483690 CPNE3O75131 537 aaKnown RBP12.4□□□□□ -0.42
MCF2-207ENST00000483690 TNFRSF21O75509 655 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 GRNP28799 593 aaKnown RBP12.4□□□□□ -0.42
MCF2-207ENST00000483690 ITGAEP38570 1179 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 SNX29Q8TEQ0 813 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 NUCKS1Q9H1E3 243 aaKnown RBP12.4□□□□□ -0.42
MCF2-207ENST00000483690 ELP3Q9H9T3 547 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 C11orf16Q9NQ32 467 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 PCDHGC4Q9Y5F7 938 aa12.4□□□□□ -0.42
MCF2-207ENST00000483690 FAM157BP0CG42 384 aa12.39□□□□□ -0.43
MCF2-207ENST00000483690 FBF1Q8TES7 1133 aa12.39□□□□□ -0.43
MCF2-207ENST00000483690 SETDB2Q96T68 719 aa12.39□□□□□ -0.43
MCF2-207ENST00000483690 PARP2Q9UGN5 583 aa12.39□□□□□ -0.43
MCF2-207ENST00000483690 KCNH4Q9UQ05 1017 aa12.39□□□□□ -0.43
MCF2-207ENST00000483690 CCDC155Q8N6L0 562 aa12.38□□□□□ -0.43
MCF2-207ENST00000483690 TRIM47Q96LD4 638 aa12.38□□□□□ -0.43
MCF2-207ENST00000483690 MRS2Q9HD23 443 aa12.38□□□□□ -0.43
MCF2-207ENST00000483690 FOXD3Q9UJU5 478 aaPredicted RBP12.38□□□□□ -0.43
MCF2-207ENST00000483690 KHNYNO15037 678 aaKnown RBP12.37□□□□□ -0.43
MCF2-207ENST00000483690 EGFRP00533 1210 aa12.37□□□□□ -0.43
MCF2-207ENST00000483690 KCNQ4P56696 695 aa12.37□□□□□ -0.43
MCF2-207ENST00000483690 DCDC2BA2VCK2 349 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 PHACTR2O75167 634 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 THBS1P07996 1170 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 PSMD2Q13200 908 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 Q6ZNB5 142 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 TRIM22Q8IYM9 498 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 TMEM63CQ9P1W3 806 aa12.36□□□□□ -0.43
MCF2-207ENST00000483690 EFSO43281 561 aa12.35□□□□□ -0.43
MCF2-207ENST00000483690 TMC4Q7Z404 712 aa12.35□□□□□ -0.43
MCF2-207ENST00000483690 NLRP13Q86W25 1043 aa12.35□□□□□ -0.43
MCF2-207ENST00000483690 GMCL1Q96IK5 515 aa12.35□□□□□ -0.43
MCF2-207ENST00000483690 FAM161BQ96MY7 647 aa12.35□□□□□ -0.43
MCF2-207ENST00000483690 DAB2P98082 770 aa12.34□□□□□ -0.43
MCF2-207ENST00000483690 SFSWAPQ12872 951 aaKnown RBP12.34□□□□□ -0.43
MCF2-207ENST00000483690 MRPL58Q14197 206 aaKnown RBP12.34□□□□□ -0.43
MCF2-207ENST00000483690 DBN1Q16643 649 aa12.34□□□□□ -0.43
MCF2-207ENST00000483690 CFHR5Q9BXR6 569 aa12.34□□□□□ -0.43
MCF2-207ENST00000483690 ZFYVE28Q9HCC9 887 aa12.34□□□□□ -0.43
MCF2-207ENST00000483690 ABI2Q9NYB9 513 aaPredicted RBP12.34□□□□□ -0.43
MCF2-207ENST00000483690 GMPR2Q9P2T1 348 aaKnown RBP12.34□□□□□ -0.43
MCF2-207ENST00000483690 TNP2Q05952 138 aa12.33□□□□□ -0.44
MCF2-207ENST00000483690 LAMC2Q13753 1193 aa12.33□□□□□ -0.44
MCF2-207ENST00000483690 TSNAXIP1Q2TAA8 658 aa12.33□□□□□ -0.44
MCF2-207ENST00000483690 TTC39BQ5VTQ0 682 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms