RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PDIA4P13667 645 aaKnown RBP11.18□□□□□ -0.62
USP40-213ENST00000483216 NPR3P17342 541 aa11.18□□□□□ -0.62
USP40-213ENST00000483216 SF3B2Q13435 895 aaKnown RBP11.18□□□□□ -0.62
USP40-213ENST00000483216 CCER1Q8TC90 406 aaPredicted RBP11.18□□□□□ -0.62
USP40-213ENST00000483216 C11orf16Q9NQ32 467 aa11.18□□□□□ -0.62
USP40-213ENST00000483216 GNEQ9Y223 722 aaKnown RBP11.17□□□□□ -0.62
USP40-213ENST00000483216 ABL1P00519 1130 aa11.16□□□□□ -0.62
USP40-213ENST00000483216 GRNP28799 593 aaKnown RBP11.16□□□□□ -0.62
USP40-213ENST00000483216 SERPINB4P48594 390 aa11.16□□□□□ -0.62
USP40-213ENST00000483216 FKBP4Q02790 459 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP40-213ENST00000483216 AVENQ9NQS1 362 aaPredicted RBP11.16□□□□□ -0.62
USP40-213ENST00000483216 FAM13BQ9NYF5 915 aa11.16□□□□□ -0.62
USP40-213ENST00000483216 ZBTB39O15060 712 aa11.15□□□□□ -0.62
USP40-213ENST00000483216 ARAFP10398 606 aa11.15□□□□□ -0.62
USP40-213ENST00000483216 ZAP70P43403 619 aa11.15□□□□□ -0.62
USP40-213ENST00000483216 INSM1Q01101 510 aaPredicted RBP11.15□□□□□ -0.62
USP40-213ENST00000483216 KCNA1Q09470 495 aa11.15□□□□□ -0.62
USP40-213ENST00000483216 MTMR3Q13615 1198 aa11.15□□□□□ -0.62
USP40-213ENST00000483216 FAM13AO94988 1023 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 SPEM2Q0P670 501 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 GRIN2CQ14957 1233 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 NOM1Q5C9Z4 860 aaKnown RBP11.14□□□□□ -0.63
USP40-213ENST00000483216 ZNF468Q5VIY5 522 aaPredicted RBP11.14□□□□□ -0.63
USP40-213ENST00000483216 SLC30A3Q99726 388 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 EFCC1Q9HA90 598 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 PRR12Q9ULL5 1215 aa11.14□□□□□ -0.63
USP40-213ENST00000483216 RTCBQ9Y3I0 505 aaKnown RBP11.14□□□□□ -0.63
USP40-213ENST00000483216 ICMTO60725 284 aa11.13□□□□□ -0.63
USP40-213ENST00000483216 LORP23490 312 aaPredicted RBP11.13□□□□□ -0.63
USP40-213ENST00000483216 MPSTP25325 297 aa11.13□□□□□ -0.63
USP40-213ENST00000483216 ZNF211Q13398 564 aaPredicted RBP11.13□□□□□ -0.63
USP40-213ENST00000483216 ALKBH2Q6NS38 261 aa11.13□□□□□ -0.63
USP40-213ENST00000483216 OXCT2Q9BYC2 517 aaPredicted RBP11.13□□□□□ -0.63
USP40-213ENST00000483216 GDF2Q9UK05 429 aaPredicted RBP11.13□□□□□ -0.63
USP40-213ENST00000483216 RGL4Q8IZJ4 473 aa11.12□□□□□ -0.63
USP40-213ENST00000483216 PIK3R5Q8WYR1 880 aa11.12□□□□□ -0.63
USP40-213ENST00000483216 ACDQ96AP0 544 aa11.12□□□□□ -0.63
USP40-213ENST00000483216 GSX2Q9BZM3 304 aa11.12□□□□□ -0.63
USP40-213ENST00000483216 ANO2Q9NQ90 1003 aa11.12□□□□□ -0.63
USP40-213ENST00000483216 PATL2C9JE40 543 aaKnown RBP11.11□□□□□ -0.63
USP40-213ENST00000483216 EGFRP00533 1210 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 EIF1AXP47813 144 aaKnown RBP11.11□□□□□ -0.63
USP40-213ENST00000483216 NEUROD1Q13562 356 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 CCINQ13939 588 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 GOLGA6L1Q8N7Z2 621 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 ZSCAN1Q8NBB4 408 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 LRRC4BQ9NT99 713 aa11.11□□□□□ -0.63
USP40-213ENST00000483216 ADH6P28332 368 aa11.1□□□□□ -0.63
USP40-213ENST00000483216 LYPD4Q6UWN0 246 aa11.1□□□□□ -0.63
USP40-213ENST00000483216 CMTR1Q8N1G2 835 aaKnown RBP11.1□□□□□ -0.63
USP40-213ENST00000483216 USP20Q9Y2K6 914 aa11.1□□□□□ -0.63
USP40-213ENST00000483216 KCNMB2Q9Y691 235 aa11.1□□□□□ -0.63
USP40-213ENST00000483216 H3BRB1 525 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 CELA2BP08218 269 aaPredicted RBP11.09□□□□□ -0.63
USP40-213ENST00000483216 ZNF385CQ66K41 422 aaPredicted RBP11.09□□□□□ -0.63
USP40-213ENST00000483216 SYT9Q86SS6 491 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 ATCAYQ86WG3 371 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 WHAMMQ8TF30 809 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 TUT1Q9H6E5 874 aaKnown RBP11.09□□□□□ -0.63
USP40-213ENST00000483216 KLF15Q9UIH9 416 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 GGA1Q9UJY5 639 aa11.09□□□□□ -0.63
USP40-213ENST00000483216 SIN3BO75182 1162 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 BCRP11274 1271 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 ECM1Q16610 540 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 SLCO4C1Q6ZQN7 724 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 GLYCTKQ8IVS8 523 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 HOMEZQ8IX15 550 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 GPR152Q8TDT2 470 aa11.08□□□□□ -0.64
USP40-213ENST00000483216 XYLBO75191 536 aa11.07□□□□□ -0.64
USP40-213ENST00000483216 PCBP4P57723 403 aaKnown RBP11.07□□□□□ -0.64
USP40-213ENST00000483216 KCTD17Q8N5Z5 321 aa11.07□□□□□ -0.64
USP40-213ENST00000483216 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.07□□□□□ -0.64
USP40-213ENST00000483216 SOWAHDA6NJG2 315 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 NEURL1BA8MQ27 555 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 OIP5O43482 229 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 MZF1P28698 734 aaPredicted RBP11.06□□□□□ -0.64
USP40-213ENST00000483216 RAB44Q7Z6P3 723 aaPredicted RBP11.06□□□□□ -0.64
USP40-213ENST00000483216 BHMTQ93088 406 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 PNMA5Q96PV4 448 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 FNDC3AQ9Y2H6 1198 aaKnown RBP11.06□□□□□ -0.64
USP40-213ENST00000483216 IVNS1ABPQ9Y6Y0 642 aa11.06□□□□□ -0.64
USP40-213ENST00000483216 RPLP1P05386 114 aaKnown RBP11.05□□□□□ -0.64
USP40-213ENST00000483216 TRIP4Q15650 581 aaPredicted RBP11.05□□□□□ -0.64
USP40-213ENST00000483216 C1orf229Q6ZS94 237 aaPredicted RBP11.05□□□□□ -0.64
USP40-213ENST00000483216 FCHSD1Q86WN1 690 aa11.05□□□□□ -0.64
USP40-213ENST00000483216 SVOPQ8N4V2 548 aa11.05□□□□□ -0.64
USP40-213ENST00000483216 EDEM1Q92611 657 aa11.05□□□□□ -0.64
USP40-213ENST00000483216 NUDT16Q96DE0 195 aaKnown RBP11.05□□□□□ -0.64
USP40-213ENST00000483216 PDGFAP04085 211 aa11.04□□□□□ -0.64
USP40-213ENST00000483216 EPXP11678 715 aa11.04□□□□□ -0.64
USP40-213ENST00000483216 PCSK2P16519 638 aa11.04□□□□□ -0.64
USP40-213ENST00000483216 MAP3K10Q02779 954 aa11.04□□□□□ -0.64
USP40-213ENST00000483216 TNFRSF25Q93038 417 aa11.04□□□□□ -0.64
USP40-213ENST00000483216 ADARB2-AS1A8MUL3 147 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 UBAP1LF5GYI3 381 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 FZD6O60353 706 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 SASH3O75995 380 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 ARHGEF15O94989 841 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 MAP3K6O95382 1288 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 NFKB1P19838 968 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms