RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 CHMP4AQ9BY43 222 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 RBM17Q96I25 401 aaKnown RBP22.82■■□□□ 1.24
COL9A3-212ENST00000481800 GLTPD2A6NH11 291 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 TOMM70O94826 608 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 DPY19L2Q6NUT2 758 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 NLRP10Q86W26 655 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 WWC1Q8IX03 1113 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 RTKN2Q8IZC4 609 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 RRAGCQ9HB90 399 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 RIC1Q4ADV7 1423 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 RNF123Q5XPI4 1314 aa22.81■■□□□ 1.24
COL9A3-212ENST00000481800 C8orf58Q8NAV2 365 aa22.8■■□□□ 1.24
COL9A3-212ENST00000481800 TRMT112Q9UI30 125 aaKnown RBP22.8■■□□□ 1.24
COL9A3-212ENST00000481800 NUP98P52948 1817 aa22.8■■□□□ 1.24
COL9A3-212ENST00000481800 HOXA10P31260 410 aaPredicted RBP22.79■■□□□ 1.24
COL9A3-212ENST00000481800 SLC10A5Q5PT55 438 aa22.79■■□□□ 1.24
COL9A3-212ENST00000481800 FKBP4Q02790 459 aaKnown RBP eCLIP22.78■■□□□ 1.24
COL9A3-212ENST00000481800 GOLGA2Q08379 1002 aa22.78■■□□□ 1.24
COL9A3-212ENST00000481800 NCBP3Q53F19 620 aaKnown RBP22.78■■□□□ 1.24
COL9A3-212ENST00000481800 CCDC30Q5VVM6 783 aa22.78■■□□□ 1.24
COL9A3-212ENST00000481800 OLFM4Q6UX06 510 aa22.78■■□□□ 1.24
COL9A3-212ENST00000481800 TSR2Q969E8 191 aaKnown RBP22.78■■□□□ 1.24
COL9A3-212ENST00000481800 CC2D2BQ6DHV5 1058 aa22.77■■□□□ 1.24
COL9A3-212ENST00000481800 RIC3Q7Z5B4 369 aa22.77■■□□□ 1.24
COL9A3-212ENST00000481800 CRAMP1Q96RY5 1269 aa22.77■■□□□ 1.24
COL9A3-212ENST00000481800 SLX4Q8IY92 1834 aa22.77■■□□□ 1.24
COL9A3-212ENST00000481800 SH3TC1Q8TE82 1336 aa22.77■■□□□ 1.24
COL9A3-212ENST00000481800 HSPA6P17066 643 aa22.76■■□□□ 1.23
COL9A3-212ENST00000481800 C3orf67Q6ZVT6 689 aa22.76■■□□□ 1.23
COL9A3-212ENST00000481800 FAM9BQ8IZU0 186 aa22.76■■□□□ 1.23
COL9A3-212ENST00000481800 TMX4Q9H1E5 349 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-212ENST00000481800 SALL2Q9Y467 1007 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-212ENST00000481800 HCLS1P14317 486 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-212ENST00000481800 VEGFAP15692 232 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-212ENST00000481800 RBM46Q8TBY0 533 aaKnown RBP22.75■■□□□ 1.23
COL9A3-212ENST00000481800 PHAXQ9H814 394 aaKnown RBP22.75■■□□□ 1.23
COL9A3-212ENST00000481800 ZNF277Q9NRM2 450 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-212ENST00000481800 IL16Q14005 1332 aa22.75■■□□□ 1.23
COL9A3-212ENST00000481800 TNRC6CQ9HCJ0 1690 aaKnown RBP22.74■■□□□ 1.23
COL9A3-212ENST00000481800 ATP5J2-PTCD1G3V325 749 aa22.74■■□□□ 1.23
COL9A3-212ENST00000481800 TCERG1O14776 1098 aaKnown RBP22.74■■□□□ 1.23
COL9A3-212ENST00000481800 PPEF1O14829 653 aaPredicted RBP22.74■■□□□ 1.23
COL9A3-212ENST00000481800 SYNE4Q8N205 404 aa22.74■■□□□ 1.23
COL9A3-212ENST00000481800 TSPYL6Q8N831 410 aa22.74■■□□□ 1.23
COL9A3-212ENST00000481800 ISCA1Q9BUE6 129 aa22.74■■□□□ 1.23
COL9A3-212ENST00000481800 SBF1O95248 1867 aa22.74■■□□□ 1.23
COL9A3-212ENST00000481800 GRIPAP1Q4V328 841 aa22.73■■□□□ 1.23
COL9A3-212ENST00000481800 ZNF428Q96B54 188 aa22.73■■□□□ 1.23
COL9A3-212ENST00000481800 DDX58O95786 925 aaKnown RBP22.72■■□□□ 1.23
COL9A3-212ENST00000481800 STK31Q9BXU1 1019 aa22.72■■□□□ 1.23
COL9A3-212ENST00000481800 ARFGEF2Q9Y6D5 1785 aa22.71■■□□□ 1.23
COL9A3-212ENST00000481800 TWISTNBQ3B726 338 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-212ENST00000481800 WDR63Q8IWG1 891 aa22.71■■□□□ 1.23
COL9A3-212ENST00000481800 PSMD1Q99460 953 aa22.71■■□□□ 1.23
COL9A3-212ENST00000481800 IARSP41252 1262 aaKnown RBP22.7■■□□□ 1.22
COL9A3-212ENST00000481800 TRIM28Q13263 835 aaKnown RBP22.7■■□□□ 1.22
COL9A3-212ENST00000481800 DDX46Q7L014 1031 aaKnown RBP22.7■■□□□ 1.22
COL9A3-212ENST00000481800 FAM89AQ96GI7 184 aa22.7■■□□□ 1.22
COL9A3-212ENST00000481800 FER1L6Q2WGJ9 1857 aa22.7■■□□□ 1.22
COL9A3-212ENST00000481800 ABCC4O15439 1325 aa22.69■■□□□ 1.22
COL9A3-212ENST00000481800 BBOX1O75936 387 aa22.69■■□□□ 1.22
COL9A3-212ENST00000481800 FSTL1Q12841 308 aa22.69■■□□□ 1.22
COL9A3-212ENST00000481800 MYD88Q99836 296 aa22.69■■□□□ 1.22
COL9A3-212ENST00000481800 DDNO94850 711 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-212ENST00000481800 JDP2Q8WYK2 163 aa22.68■■□□□ 1.22
COL9A3-212ENST00000481800 ATP6V0A2Q9Y487 856 aa22.68■■□□□ 1.22
COL9A3-212ENST00000481800 CACNA1SQ13698 1873 aa22.68■■□□□ 1.22
COL9A3-212ENST00000481800 RTL5Q5HYW3 569 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-212ENST00000481800 SMC1BQ8NDV3 1235 aa22.67■■□□□ 1.22
COL9A3-212ENST00000481800 TIAM2Q8IVF5 1701 aa22.66■■□□□ 1.22
COL9A3-212ENST00000481800 FANCIQ9NVI1 1328 aa22.66■■□□□ 1.22
COL9A3-212ENST00000481800 HSP90B1P14625 803 aaKnown RBP22.66■■□□□ 1.22
COL9A3-212ENST00000481800 APLP1P51693 650 aa22.66■■□□□ 1.22
COL9A3-212ENST00000481800 GRAPQ13588 217 aa22.66■■□□□ 1.22
COL9A3-212ENST00000481800 GRAPLQ8TC17 118 aaPredicted RBP22.66■■□□□ 1.22
COL9A3-212ENST00000481800 IRS4O14654 1257 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-212ENST00000481800 ZBTB38Q8NAP3 1195 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-212ENST00000481800 CCDC191Q8NCU4 936 aa22.65■■□□□ 1.22
COL9A3-212ENST00000481800 METTL22Q9BUU2 404 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-212ENST00000481800 ANKRD36CQ5JPF3 1778 aa22.64■■□□□ 1.22
COL9A3-212ENST00000481800 POTECB2RU33 542 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 SLC4A2P04920 1241 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 KSR2Q6VAB6 950 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 SP8Q8IXZ3 490 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 LARGE2Q8N3Y3 721 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 MAP3K2Q9Y2U5 619 aa22.64■■□□□ 1.21
COL9A3-212ENST00000481800 IQCA1LA6NCM1 817 aa22.63■■□□□ 1.21
COL9A3-212ENST00000481800 SF3B3Q15393 1217 aaKnown RBP22.63■■□□□ 1.21
COL9A3-212ENST00000481800 TMC4Q7Z404 712 aa22.63■■□□□ 1.21
COL9A3-212ENST00000481800 SUPT20HQ8NEM7 779 aa22.63■■□□□ 1.21
COL9A3-212ENST00000481800 CWC25Q9NXE8 425 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-212ENST00000481800 SNED1Q8TER0 1413 aa22.63■■□□□ 1.21
COL9A3-212ENST00000481800 ZNF541Q9H0D2 1346 aa22.62■■□□□ 1.21
COL9A3-212ENST00000481800 PI4KAP2A4QPH2 592 aa22.62■■□□□ 1.21
COL9A3-212ENST00000481800 FZD9O00144 591 aa22.62■■□□□ 1.21
COL9A3-212ENST00000481800 EIF6P56537 245 aaKnown RBP22.62■■□□□ 1.21
COL9A3-212ENST00000481800 NEXNQ0ZGT2 675 aa22.62■■□□□ 1.21
COL9A3-212ENST00000481800 DPP8Q6V1X1 898 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-212ENST00000481800 SLC51AQ86UW1 340 aa22.62■■□□□ 1.21
COL9A3-212ENST00000481800 PI4KAP1Q8N8J0 262 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms