RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 GYS1P13807 737 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 HLFQ16534 295 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 ZNF827Q17R98 1081 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 USPL1Q5W0Q7 1092 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 TPTE2Q6XPS3 522 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 ARXQ96QS3 562 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 SETDB2Q96T68 719 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 BCL2L12Q9HB09 334 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 NUP188Q5SRE5 1749 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 PNPLA7Q6ZV29 1317 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 ARFGEF2Q9Y6D5 1785 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 TM4SF1P30408 202 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 MTX1Q13505 466 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 FKBP8Q14318 412 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 SLC10A5Q5PT55 438 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 COL23A1Q86Y22 540 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-225ENST00000481502 EXOC6Q8TAG9 804 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 UTP14AQ9BVJ6 771 aaKnown RBP10.35□□□□□ -0.75
SYNE1-225ENST00000481502 PPP4R2Q9NY27 417 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 TNNQ9UQP3 1299 aa10.35□□□□□ -0.75
SYNE1-225ENST00000481502 NIP7Q9Y221 180 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-225ENST00000481502 SH3TC1Q8TE82 1336 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 BCORQ6W2J9 1755 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 HMMRO75330 724 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 CASP7P55210 303 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 HDAC1Q13547 482 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-225ENST00000481502 CWF19L2Q2TBE0 894 aaKnown RBP10.34□□□□□ -0.75
SYNE1-225ENST00000481502 NUP98P52948 1817 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 CARMIL3Q8ND23 1372 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 SCN7AQ01118 1682 aa10.34□□□□□ -0.75
SYNE1-225ENST00000481502 RIC1Q4ADV7 1423 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 ATP5J2-PTCD1G3V325 749 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 PHF14O94880 888 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 NBPF7P0C2Y1 421 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-225ENST00000481502 ATP8B2P98198 1209 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 RABL6Q3YEC7 729 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-225ENST00000481502 AMIGO3Q86WK7 504 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 MEIS3Q99687 375 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 RWDD1Q9H446 243 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-225ENST00000481502 ANO8Q9HCE9 1232 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-225ENST00000481502 TRMT112Q9UI30 125 aaKnown RBP10.33□□□□□ -0.76
SYNE1-225ENST00000481502 PDZRN3Q9UPQ7 1066 aa10.33□□□□□ -0.76
SYNE1-225ENST00000481502 ANKRD36CQ5JPF3 1778 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 PDE8AO60658 829 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 NTSR2O95665 410 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 SUSD4Q5VX71 490 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 TBC1D9BQ66K14 1250 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 ANKRD44Q8N8A2 993 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 FBXO3Q9UK99 471 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 UBN2Q6ZU65 1347 aa10.32□□□□□ -0.76
SYNE1-225ENST00000481502 C4AP0C0L4 1744 aa10.31□□□□□ -0.76
SYNE1-225ENST00000481502 CSF1RP07333 972 aa10.31□□□□□ -0.76
SYNE1-225ENST00000481502 NFIXQ14938 502 aa10.31□□□□□ -0.76
SYNE1-225ENST00000481502 ILDR2Q71H61 639 aa10.31□□□□□ -0.76
SYNE1-225ENST00000481502 UBE3BQ7Z3V4 1068 aa10.31□□□□□ -0.76
SYNE1-225ENST00000481502 NBPF5PQ86XG9 351 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-225ENST00000481502 SRP68Q9UHB9 627 aaKnown RBP10.31□□□□□ -0.76
SYNE1-225ENST00000481502 RTL9Q8NET4 1388 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 IRS4O14654 1257 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-225ENST00000481502 SERPINB2P05120 415 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 GPTP24298 496 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 GTF2E1P29083 439 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-225ENST00000481502 SF3B3Q15393 1217 aaKnown RBP10.3□□□□□ -0.76
SYNE1-225ENST00000481502 HSP90AB4PQ58FF6 505 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 CEP85Q6P2H3 762 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 SSH3Q8TE77 659 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 GCC1Q96CN9 775 aa10.3□□□□□ -0.76
SYNE1-225ENST00000481502 LRRFIP2Q9Y608 721 aaKnown RBP10.3□□□□□ -0.76
SYNE1-225ENST00000481502 KLRG2A4D1S0 409 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-225ENST00000481502 POLRMTO00411 1230 aaKnown RBP10.29□□□□□ -0.76
SYNE1-225ENST00000481502 ST5P78524 1137 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 POLA2Q14181 598 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 FAM89AQ96GI7 184 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 KAZALD1Q96I82 304 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 CCDC136Q96JN2 1154 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 NLRP3Q96P20 1036 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 MTFR1LQ9H019 292 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 NOP58Q9Y2X3 529 aaKnown RBP10.29□□□□□ -0.76
SYNE1-225ENST00000481502 PCDHB15Q9Y5E8 787 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 GTF3C3Q9Y5Q9 886 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 PARP3Q9Y6F1 533 aa10.29□□□□□ -0.76
SYNE1-225ENST00000481502 COL24A1Q17RW2 1714 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 IRX6P78412 446 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-225ENST00000481502 FOXO4P98177 505 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 CCDC152Q4G0S7 254 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 CENPQQ7L2Z9 268 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-225ENST00000481502 CNBD1Q8NA66 436 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 SUCLG2Q96I99 432 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 BRIP1Q9BX63 1249 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 DCTPP1Q9H773 170 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 COPRSQ9NQ92 184 aa10.28□□□□□ -0.76
SYNE1-225ENST00000481502 AFDNP55196 1824 aaKnown RBP10.28□□□□□ -0.76
SYNE1-225ENST00000481502 RAB11FIP3O75154 756 aa10.27□□□□□ -0.77
SYNE1-225ENST00000481502 PDE6BP35913 854 aa10.27□□□□□ -0.77
SYNE1-225ENST00000481502 CTSWP56202 376 aa10.27□□□□□ -0.77
SYNE1-225ENST00000481502 PRR5LQ6MZQ0 368 aa10.27□□□□□ -0.77
SYNE1-225ENST00000481502 TTLL11Q8NHH1 800 aa10.27□□□□□ -0.77
SYNE1-225ENST00000481502 BICC1Q9H694 974 aaKnown RBP10.27□□□□□ -0.77
SYNE1-225ENST00000481502 TUBGCP6Q96RT7 1819 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 NPHP1O15259 732 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms