RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PPP1R42Q7Z4L9 355 aa12.71□□□□□ -0.37
USP39-215ENST00000481409 ANKRD44Q8N8A2 993 aa12.71□□□□□ -0.37
USP39-215ENST00000481409 ZBTB38Q8NAP3 1195 aaPredicted RBP12.71□□□□□ -0.37
USP39-215ENST00000481409 AKT1S1Q96B36 256 aa12.71□□□□□ -0.37
USP39-215ENST00000481409 ARXQ96QS3 562 aa12.71□□□□□ -0.37
USP39-215ENST00000481409 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.7□□□□□ -0.38
USP39-215ENST00000481409 KCNQ4P56696 695 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 HLFQ16534 295 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 CEP85Q6P2H3 762 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 NLRP10Q86W26 655 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 ARHGEF1Q92888 912 aaKnown RBP12.7□□□□□ -0.38
USP39-215ENST00000481409 GCC1Q96CN9 775 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 PLA2G12BQ9BX93 195 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 PCDHB15Q9Y5E8 787 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 C4AP0C0L4 1744 aa12.7□□□□□ -0.38
USP39-215ENST00000481409 KDM2BQ8NHM5 1336 aa12.69□□□□□ -0.38
USP39-215ENST00000481409 NBPF7P0C2Y1 421 aaPredicted RBP12.69□□□□□ -0.38
USP39-215ENST00000481409 ATP8B2P98198 1209 aa12.69□□□□□ -0.38
USP39-215ENST00000481409 NYXQ9GZU5 481 aa12.69□□□□□ -0.38
USP39-215ENST00000481409 TFCP2L1Q9NZI6 479 aa12.69□□□□□ -0.38
USP39-215ENST00000481409 EP400Q96L91 3159 aa12.69□□□□□ -0.38
USP39-215ENST00000481409 ATP5J2-PTCD1G3V325 749 aa12.68□□□□□ -0.38
USP39-215ENST00000481409 CASP7P55210 303 aa12.68□□□□□ -0.38
USP39-215ENST00000481409 EN1Q05925 392 aaPredicted RBP12.68□□□□□ -0.38
USP39-215ENST00000481409 RABL6Q3YEC7 729 aaPredicted RBP12.68□□□□□ -0.38
USP39-215ENST00000481409 B4GALNT3Q6L9W6 998 aa12.68□□□□□ -0.38
USP39-215ENST00000481409 STK32BQ9NY57 414 aa12.68□□□□□ -0.38
USP39-215ENST00000481409 LRRFIP2Q9Y608 721 aaKnown RBP12.68□□□□□ -0.38
USP39-215ENST00000481409 EZH2Q15910 746 aaKnown RBP12.67□□□□□ -0.38
USP39-215ENST00000481409 HSP90AB4PQ58FF6 505 aa12.67□□□□□ -0.38
USP39-215ENST00000481409 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
USP39-215ENST00000481409 UBE3BQ7Z3V4 1068 aa12.67□□□□□ -0.38
USP39-215ENST00000481409 SSH3Q8TE77 659 aa12.67□□□□□ -0.38
USP39-215ENST00000481409 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
USP39-215ENST00000481409 UTP14AQ9BVJ6 771 aaKnown RBP12.67□□□□□ -0.38
USP39-215ENST00000481409 NIP7Q9Y221 180 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP39-215ENST00000481409 SH3TC1Q8TE82 1336 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 COL24A1Q17RW2 1714 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 SLC15A2Q16348 729 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 SMC5Q8IY18 1101 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 NLGN1Q8N2Q7 840 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 DCTPP1Q9H773 170 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 TRMT112Q9UI30 125 aaKnown RBP12.66□□□□□ -0.38
USP39-215ENST00000481409 CARMIL3Q8ND23 1372 aa12.66□□□□□ -0.38
USP39-215ENST00000481409 UBN2Q6ZU65 1347 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 PDE8AO60658 829 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 PHF14O94880 888 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 POLA2Q14181 598 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 TPTE2Q6XPS3 522 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 SIRT2Q8IXJ6 389 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 SUCLG2Q96I99 432 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 FBXO3Q9UK99 471 aa12.65□□□□□ -0.38
USP39-215ENST00000481409 RIC1Q4ADV7 1423 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 LAMB2P55268 1798 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 RAB11FIP3O75154 756 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 IGHDP01880 384 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 GYS1P13807 737 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 GPTP24298 496 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 ZNF827Q17R98 1081 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 SLC10A5Q5PT55 438 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 PELP1Q8IZL8 1130 aaKnown RBP12.64□□□□□ -0.39
USP39-215ENST00000481409 BICC1Q9H694 974 aaKnown RBP12.64□□□□□ -0.39
USP39-215ENST00000481409 C1orf115Q9H7X2 142 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 MYH3P11055 1940 aa12.64□□□□□ -0.39
USP39-215ENST00000481409 TUBGCP6Q96RT7 1819 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 SRGAP3O43295 1099 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 NTSR2O95665 410 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 CSF1RP07333 972 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 SUSD4Q5VX71 490 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 TBC1D9BQ66K14 1250 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 SLC16A10Q8TF71 515 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 KAZALD1Q96I82 304 aa12.63□□□□□ -0.39
USP39-215ENST00000481409 NOP58Q9Y2X3 529 aaKnown RBP12.63□□□□□ -0.39
USP39-215ENST00000481409 RTL9Q8NET4 1388 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 IRS4O14654 1257 aaPredicted RBP12.62□□□□□ -0.39
USP39-215ENST00000481409 TM4SF1P30408 202 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 FOXO4P98177 505 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 AMIGO3Q86WK7 504 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 ERC1Q8IUD2 1116 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 UPF1Q92900 1129 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP39-215ENST00000481409 FAM89AQ96GI7 184 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 ZBTB47Q9UFB7 747 aaPredicted RBP12.62□□□□□ -0.39
USP39-215ENST00000481409 SRP68Q9UHB9 627 aaKnown RBP12.62□□□□□ -0.39
USP39-215ENST00000481409 PNPLA7Q6ZV29 1317 aa12.62□□□□□ -0.39
USP39-215ENST00000481409 PNMA6EA0A0J9YXQ4 647 aa12.61□□□□□ -0.39
USP39-215ENST00000481409 DEFB132Q7Z7B7 95 aa12.61□□□□□ -0.39
USP39-215ENST00000481409 NBPF5PQ86XG9 351 aaPredicted RBP12.61□□□□□ -0.39
USP39-215ENST00000481409 COL23A1Q86Y22 540 aaPredicted RBP12.61□□□□□ -0.39
USP39-215ENST00000481409 COPRSQ9NQ92 184 aa12.61□□□□□ -0.39
USP39-215ENST00000481409 GTF2E1P29083 439 aaPredicted RBP12.6□□□□□ -0.39
USP39-215ENST00000481409 CTSWP56202 376 aa12.6□□□□□ -0.39
USP39-215ENST00000481409 NFIXQ14938 502 aa12.6□□□□□ -0.39
USP39-215ENST00000481409 LMBR1LQ6UX01 489 aa12.6□□□□□ -0.39
USP39-215ENST00000481409 ST5P78524 1137 aa12.59□□□□□ -0.39
USP39-215ENST00000481409 NUCB1Q02818 461 aa12.59□□□□□ -0.39
USP39-215ENST00000481409 SF3B3Q15393 1217 aaKnown RBP12.59□□□□□ -0.39
USP39-215ENST00000481409 CCDC57Q2TAC2 916 aa12.59□□□□□ -0.39
USP39-215ENST00000481409 CCDC152Q4G0S7 254 aa12.59□□□□□ -0.39
USP39-215ENST00000481409 TTLL11Q8NHH1 800 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms