RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 HDAC1Q13547 482 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-206ENST00000480362 ZNF827Q17R98 1081 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 CEP85Q6P2H3 762 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 SIRT2Q8IXJ6 389 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 BCL2L12Q9HB09 334 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 ANKRD36CQ5JPF3 1778 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 BCORQ6W2J9 1755 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 UBE3BQ7Z3V4 1068 aa22■■□□□ 1.11
UPF3A-206ENST00000480362 SUCLG2Q96I99 432 aa22■■□□□ 1.11
UPF3A-206ENST00000480362 TFCP2L1Q9NZI6 479 aa22■■□□□ 1.11
UPF3A-206ENST00000480362 KDM2BQ8NHM5 1336 aa22■■□□□ 1.11
UPF3A-206ENST00000480362 CASP7P55210 303 aa21.99■■□□□ 1.11
UPF3A-206ENST00000480362 ATP8B2P98198 1209 aa21.99■■□□□ 1.11
UPF3A-206ENST00000480362 CENPQQ7L2Z9 268 aaPredicted RBP21.99■■□□□ 1.11
UPF3A-206ENST00000480362 NIP7Q9Y221 180 aaKnown RBP eCLIP21.99■■□□□ 1.11
UPF3A-206ENST00000480362 UBN2Q6ZU65 1347 aa21.99■■□□□ 1.11
UPF3A-206ENST00000480362 USP42Q9H9J4 1324 aaKnown RBP21.99■■□□□ 1.11
UPF3A-206ENST00000480362 RTL5Q5HYW3 569 aaPredicted RBP21.98■■□□□ 1.11
UPF3A-206ENST00000480362 KAZALD1Q96I82 304 aa21.98■■□□□ 1.11
UPF3A-206ENST00000480362 SCN7AQ01118 1682 aa21.98■■□□□ 1.11
UPF3A-206ENST00000480362 C4AP0C0L4 1744 aa21.97■■□□□ 1.11
UPF3A-206ENST00000480362 PCCAP05165 728 aaPredicted RBP21.97■■□□□ 1.11
UPF3A-206ENST00000480362 PARP10Q53GL7 1025 aa21.97■■□□□ 1.11
UPF3A-206ENST00000480362 SUSD4Q5VX71 490 aa21.96■■□□□ 1.11
UPF3A-206ENST00000480362 TBC1D9BQ66K14 1250 aa21.96■■□□□ 1.11
UPF3A-206ENST00000480362 ZBTB38Q8NAP3 1195 aaPredicted RBP21.96■■□□□ 1.11
UPF3A-206ENST00000480362 FAM89AQ96GI7 184 aa21.96■■□□□ 1.11
UPF3A-206ENST00000480362 TRMT112Q9UI30 125 aaKnown RBP21.96■■□□□ 1.11
UPF3A-206ENST00000480362 HMMRO75330 724 aa21.95■■□□□ 1.1
UPF3A-206ENST00000480362 BICC1Q9H694 974 aaKnown RBP21.95■■□□□ 1.1
UPF3A-206ENST00000480362 PNMA6EA0A0J9YXQ4 647 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 FAM177BA6PVY3 158 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 SOCS7O14512 581 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 EPHA10Q5JZY3 1008 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 BICDL1Q6ZP65 573 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 PPP1R42Q7Z4L9 355 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 FLAD1Q8NFF5 587 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 UTP14AQ9BVJ6 771 aaKnown RBP21.94■■□□□ 1.1
UPF3A-206ENST00000480362 STK32BQ9NY57 414 aa21.94■■□□□ 1.1
UPF3A-206ENST00000480362 SLC15A2Q16348 729 aa21.93■■□□□ 1.1
UPF3A-206ENST00000480362 COL23A1Q86Y22 540 aaPredicted RBP21.93■■□□□ 1.1
UPF3A-206ENST00000480362 ANO8Q9HCE9 1232 aaPredicted RBP21.93■■□□□ 1.1
UPF3A-206ENST00000480362 CDHR2Q9BYE9 1310 aa21.92■■□□□ 1.1
UPF3A-206ENST00000480362 MTX1Q13505 466 aa21.92■■□□□ 1.1
UPF3A-206ENST00000480362 SYNE4Q8N205 404 aa21.92■■□□□ 1.1
UPF3A-206ENST00000480362 SETDB2Q96T68 719 aa21.92■■□□□ 1.1
UPF3A-206ENST00000480362 PNPLA7Q6ZV29 1317 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 MSH5O43196 834 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 SRGAP3O43295 1099 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 GYS1P13807 737 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 FOXO4P98177 505 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 POLA2Q14181 598 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 SSH3Q8TE77 659 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 TUBGCP6Q96RT7 1819 aa21.91■■□□□ 1.1
UPF3A-206ENST00000480362 SH3TC1Q8TE82 1336 aa21.9■■□□□ 1.1
UPF3A-206ENST00000480362 NTSR2O95665 410 aa21.9■■□□□ 1.1
UPF3A-206ENST00000480362 RABL6Q3YEC7 729 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-206ENST00000480362 SMC5Q8IY18 1101 aa21.9■■□□□ 1.1
UPF3A-206ENST00000480362 UPF1Q92900 1129 aaKnown RBP eCLIP21.9■■□□□ 1.1
UPF3A-206ENST00000480362 DCTPP1Q9H773 170 aa21.9■■□□□ 1.1
UPF3A-206ENST00000480362 IRS4O14654 1257 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-206ENST00000480362 GCC1Q96CN9 775 aa21.89■■□□□ 1.09
UPF3A-206ENST00000480362 PLA2G12BQ9BX93 195 aa21.89■■□□□ 1.09
UPF3A-206ENST00000480362 NFIXQ14938 502 aa21.88■■□□□ 1.09
UPF3A-206ENST00000480362 LMBR1LQ6UX01 489 aa21.88■■□□□ 1.09
UPF3A-206ENST00000480362 NUTM1Q86Y26 1132 aa21.87■■□□□ 1.09
UPF3A-206ENST00000480362 PDE8AO60658 829 aa21.86■■□□□ 1.09
UPF3A-206ENST00000480362 NBPF5PQ86XG9 351 aaPredicted RBP21.86■■□□□ 1.09
UPF3A-206ENST00000480362 NYXQ9GZU5 481 aa21.86■■□□□ 1.09
UPF3A-206ENST00000480362 HCLS1P14317 486 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-206ENST00000480362 GTF2E1P29083 439 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-206ENST00000480362 TM4SF1P30408 202 aa21.85■■□□□ 1.09
UPF3A-206ENST00000480362 ERFEQ4G0M1 354 aa21.85■■□□□ 1.09
UPF3A-206ENST00000480362 TPTE2Q6XPS3 522 aa21.85■■□□□ 1.09
UPF3A-206ENST00000480362 PDZRN3Q9UPQ7 1066 aa21.85■■□□□ 1.09
UPF3A-206ENST00000480362 CHMP3Q9Y3E7 222 aa21.85■■□□□ 1.09
UPF3A-206ENST00000480362 SURF6O75683 361 aaKnown RBP21.84■■□□□ 1.09
UPF3A-206ENST00000480362 CSF1RP07333 972 aa21.84■■□□□ 1.09
UPF3A-206ENST00000480362 HSP90B1P14625 803 aaKnown RBP21.84■■□□□ 1.09
UPF3A-206ENST00000480362 NLGN1Q8N2Q7 840 aa21.84■■□□□ 1.09
UPF3A-206ENST00000480362 EXOC6BQ9Y2D4 811 aa21.84■■□□□ 1.09
UPF3A-206ENST00000480362 CARMIL3Q8ND23 1372 aa21.84■■□□□ 1.09
UPF3A-206ENST00000480362 COL24A1Q17RW2 1714 aa21.83■■□□□ 1.09
UPF3A-206ENST00000480362 ANKRD45Q5TZF3 282 aa21.83■■□□□ 1.09
UPF3A-206ENST00000480362 RFX5P48382 616 aaPredicted RBP21.82■■□□□ 1.08
UPF3A-206ENST00000480362 CTSWP56202 376 aa21.82■■□□□ 1.08
UPF3A-206ENST00000480362 NUCB1Q02818 461 aa21.82■■□□□ 1.08
UPF3A-206ENST00000480362 SLC10A5Q5PT55 438 aa21.82■■□□□ 1.08
UPF3A-206ENST00000480362 TTLL11Q8NHH1 800 aa21.82■■□□□ 1.08
UPF3A-206ENST00000480362 PA2G4Q9UQ80 394 aaKnown RBP21.82■■□□□ 1.08
UPF3A-206ENST00000480362 QSER1Q2KHR3 1735 aa21.82■■□□□ 1.08
UPF3A-206ENST00000480362 SERPINB2P05120 415 aa21.81■■□□□ 1.08
UPF3A-206ENST00000480362 SKAP1Q86WV1 359 aa21.81■■□□□ 1.08
UPF3A-206ENST00000480362 CCDC85AQ96PX6 553 aaPredicted RBP21.81■■□□□ 1.08
UPF3A-206ENST00000480362 NOP58Q9Y2X3 529 aaKnown RBP21.81■■□□□ 1.08
UPF3A-206ENST00000480362 APBB1O00213 710 aa21.8■■□□□ 1.08
UPF3A-206ENST00000480362 CHD1LQ86WJ1 897 aa21.8■■□□□ 1.08
UPF3A-206ENST00000480362 KLHDC4Q8TBB5 520 aa21.8■■□□□ 1.08
UPF3A-206ENST00000480362 COPRSQ9NQ92 184 aa21.8■■□□□ 1.08
UPF3A-206ENST00000480362 DDX60Q8IY21 1712 aaKnown RBP21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms