RNA–Protein interactions for RNA: ENST00000479586.5

HMGN1-212, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 841 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-212ENST00000479586 TNRC18O15417 2968 aaPredicted RBP23.31■■□□□ 1.32
HMGN1-212ENST00000479586 SNRPA1P09661 255 aaKnown RBP23.31■■□□□ 1.32
HMGN1-212ENST00000479586 CRY2Q49AN0 593 aa23.31■■□□□ 1.32
HMGN1-212ENST00000479586 PHACTR3Q96KR7 559 aa23.31■■□□□ 1.32
HMGN1-212ENST00000479586 RGL2O15211 777 aa23.3■■□□□ 1.32
HMGN1-212ENST00000479586 GTF2E1P29083 439 aaPredicted RBP23.3■■□□□ 1.32
HMGN1-212ENST00000479586 PCDH10Q9P2E7 1040 aa23.3■■□□□ 1.32
HMGN1-212ENST00000479586 PER1O15534 1290 aaPredicted RBP23.29■■□□□ 1.32
HMGN1-212ENST00000479586 USP50Q70EL3 339 aaPredicted RBP23.29■■□□□ 1.32
HMGN1-212ENST00000479586 CFAP44Q96MT7 982 aa23.29■■□□□ 1.32
HMGN1-212ENST00000479586 KIF7Q2M1P5 1343 aa23.29■■□□□ 1.32
HMGN1-212ENST00000479586 NUTM1Q86Y26 1132 aa23.28■■□□□ 1.32
HMGN1-212ENST00000479586 LARGE2Q8N3Y3 721 aa23.28■■□□□ 1.32
HMGN1-212ENST00000479586 MCOLN1Q9GZU1 580 aa23.28■■□□□ 1.32
HMGN1-212ENST00000479586 CLSPNQ9HAW4 1339 aa23.28■■□□□ 1.32
HMGN1-212ENST00000479586 PRKAR2BP31323 418 aa23.27■■□□□ 1.32
HMGN1-212ENST00000479586 MAP2K2P36507 400 aa23.27■■□□□ 1.32
HMGN1-212ENST00000479586 TRIM26Q12899 539 aaPredicted RBP23.27■■□□□ 1.32
HMGN1-212ENST00000479586 CC2D2BQ6DHV5 1058 aa23.27■■□□□ 1.32
HMGN1-212ENST00000479586 CASP8AP2Q9UKL3 1982 aa23.27■■□□□ 1.32
HMGN1-212ENST00000479586 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
HMGN1-212ENST00000479586 MCM10Q7L590 875 aa23.26■■□□□ 1.31
HMGN1-212ENST00000479586 SAPCD2Q86UD0 394 aa23.25■■□□□ 1.31
HMGN1-212ENST00000479586 RSPH6AQ9H0K4 717 aa23.25■■□□□ 1.31
HMGN1-212ENST00000479586 RPGRQ92834 1020 aaKnown RBP23.24■■□□□ 1.31
HMGN1-212ENST00000479586 TCERG1O14776 1098 aaKnown RBP23.23■■□□□ 1.31
HMGN1-212ENST00000479586 CA12O43570 354 aa23.23■■□□□ 1.31
HMGN1-212ENST00000479586 CELF2O95319 508 aaKnown RBP23.23■■□□□ 1.31
HMGN1-212ENST00000479586 HOXA10P31260 410 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-212ENST00000479586 NIM1KQ8IY84 436 aa23.23■■□□□ 1.31
HMGN1-212ENST00000479586 NYXQ9GZU5 481 aa23.23■■□□□ 1.31
HMGN1-212ENST00000479586 RIC1Q4ADV7 1423 aa23.23■■□□□ 1.31
HMGN1-212ENST00000479586 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
HMGN1-212ENST00000479586 ADARB2Q9NS39 739 aaKnown RBP23.22■■□□□ 1.31
HMGN1-212ENST00000479586 GPRC5DQ9NZD1 345 aa23.22■■□□□ 1.31
HMGN1-212ENST00000479586 PDE4DIPQ5VU43 2346 aa23.22■■□□□ 1.31
HMGN1-212ENST00000479586 PPEF1O14829 653 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-212ENST00000479586 DCTN1Q14203 1278 aa23.21■■□□□ 1.31
HMGN1-212ENST00000479586 NGEFQ8N5V2 710 aa23.21■■□□□ 1.31
HMGN1-212ENST00000479586 GLIS2Q9BZE0 524 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-212ENST00000479586 LAMB4A4D0S4 1761 aa23.21■■□□□ 1.31
HMGN1-212ENST00000479586 NUP98P52948 1817 aa23.21■■□□□ 1.31
HMGN1-212ENST00000479586 PPIP5K2O43314 1243 aa23.2■■□□□ 1.3
HMGN1-212ENST00000479586 BRPF1P55201 1214 aaPredicted RBP23.2■■□□□ 1.3
HMGN1-212ENST00000479586 DGKZQ13574 1117 aa23.2■■□□□ 1.3
HMGN1-212ENST00000479586 AOC3Q16853 763 aa23.2■■□□□ 1.3
HMGN1-212ENST00000479586 GRIPAP1Q4V328 841 aa23.2■■□□□ 1.3
HMGN1-212ENST00000479586 RTF1Q92541 710 aaKnown RBP23.2■■□□□ 1.3
HMGN1-212ENST00000479586 UBN2Q6ZU65 1347 aa23.19■■□□□ 1.3
HMGN1-212ENST00000479586 NPC1L1Q9UHC9 1359 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 GPTP24298 496 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 CIAPIN1Q6FI81 312 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 C3orf67Q6ZVT6 689 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 HHIPL1Q96JK4 782 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 CRAMP1Q96RY5 1269 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 ZNF408Q9H9D4 720 aa23.18■■□□□ 1.3
HMGN1-212ENST00000479586 MAP3K15Q6ZN16 1313 aa23.17■■□□□ 1.3
HMGN1-212ENST00000479586 ERVV-1B6SEH8 477 aa23.17■■□□□ 1.3
HMGN1-212ENST00000479586 GMPSP49915 693 aaPredicted RBP23.17■■□□□ 1.3
HMGN1-212ENST00000479586 RBM17Q96I25 401 aaKnown RBP23.17■■□□□ 1.3
HMGN1-212ENST00000479586 IBTKQ9P2D0 1353 aaPredicted RBP23.16■■□□□ 1.3
HMGN1-212ENST00000479586 CXCL9Q07325 125 aa23.16■■□□□ 1.3
HMGN1-212ENST00000479586 SUSD4Q5VX71 490 aa23.16■■□□□ 1.3
HMGN1-212ENST00000479586 TTLL7Q6ZT98 887 aa23.16■■□□□ 1.3
HMGN1-212ENST00000479586 MIS18AQ9NYP9 233 aa23.16■■□□□ 1.3
HMGN1-212ENST00000479586 ZIC5Q96T25 663 aa23.15■■□□□ 1.3
HMGN1-212ENST00000479586 ZBTB3Q9H5J0 574 aa23.14■■□□□ 1.29
HMGN1-212ENST00000479586 PGAP2Q9UHJ9 254 aa23.14■■□□□ 1.29
HMGN1-212ENST00000479586 ZNRF3Q9ULT6 936 aa23.14■■□□□ 1.29
HMGN1-212ENST00000479586 NTSR2O95665 410 aa23.13■■□□□ 1.29
HMGN1-212ENST00000479586 HIRAP54198 1017 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-212ENST00000479586 KIF6Q6ZMV9 814 aa23.13■■□□□ 1.29
HMGN1-212ENST00000479586 TAF7Q15545 349 aaPredicted RBP23.12■■□□□ 1.29
HMGN1-212ENST00000479586 RRP7AQ9Y3A4 280 aaKnown RBP23.12■■□□□ 1.29
HMGN1-212ENST00000479586 ATP6V0A2Q9Y487 856 aa23.12■■□□□ 1.29
HMGN1-212ENST00000479586 U2AF1L5P0DN76 240 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-212ENST00000479586 U2AF1Q01081 240 aaKnown RBP eCLIP23.11■■□□□ 1.291e-6■□□□□ 10.2
HMGN1-212ENST00000479586 TRPM4Q8TD43 1214 aa23.11■■□□□ 1.29
HMGN1-212ENST00000479586 CFAP53Q96M91 514 aa23.11■■□□□ 1.29
HMGN1-212ENST00000479586 VPS33BQ9H267 617 aa23.11■■□□□ 1.29
HMGN1-212ENST00000479586 MYL6BP14649 208 aa23.1■■□□□ 1.29
HMGN1-212ENST00000479586 NOGQ13253 232 aa23.1■■□□□ 1.29
HMGN1-212ENST00000479586 ZNF34Q8IZ26 560 aa23.1■■□□□ 1.29
HMGN1-212ENST00000479586 SHTN1A0MZ66 631 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
HMGN1-212ENST00000479586 RAD17O75943 681 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 DLK2Q6UY11 383 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 CDC37L1Q7L3B6 337 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 ZC3H15Q8WU90 426 aaKnown RBP23.09■■□□□ 1.29
HMGN1-212ENST00000479586 BCL2L13Q9BXK5 485 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 RTFDC1Q9BY42 306 aaPredicted RBP23.09■■□□□ 1.29
HMGN1-212ENST00000479586 TMX4Q9H1E5 349 aaPredicted RBP23.09■■□□□ 1.29
HMGN1-212ENST00000479586 KDM3BQ7LBC6 1761 aa23.09■■□□□ 1.29
HMGN1-212ENST00000479586 ABCC4O15439 1325 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 CDHR2Q9BYE9 1310 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 SOX10P56693 466 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 HUNKP57058 714 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 SUPT20HQ8NEM7 779 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 NUDCQ9Y266 331 aa23.08■■□□□ 1.29
HMGN1-212ENST00000479586 NLRP3Q96P20 1036 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms