RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 CASZ1Q86V15 1759 aa16.55■□□□□ 0.24
CHD3-210ENST00000479080 H7C1W4 665 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 GRM8O00222 908 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 NTSR2O95665 410 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 NEXNQ0ZGT2 675 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 HSP90AB3PQ58FF7 597 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 NPM2Q86SE8 214 aaKnown RBP16.54■□□□□ 0.24
CHD3-210ENST00000479080 CCDC191Q8NCU4 936 aa16.54■□□□□ 0.24
CHD3-210ENST00000479080 CWC25Q9NXE8 425 aaPredicted RBP16.54■□□□□ 0.24
CHD3-210ENST00000479080 ZPR1O75312 459 aa16.53■□□□□ 0.24
CHD3-210ENST00000479080 HMGB2P26583 209 aaKnown RBP16.53■□□□□ 0.24
CHD3-210ENST00000479080 DDR1Q08345 913 aa16.53■□□□□ 0.24
CHD3-210ENST00000479080 NFIXQ14938 502 aa16.53■□□□□ 0.24
CHD3-210ENST00000479080 EPHA10Q5JZY3 1008 aa16.53■□□□□ 0.24
CHD3-210ENST00000479080 SUCLG2Q96I99 432 aa16.53■□□□□ 0.24
CHD3-210ENST00000479080 NIP7Q9Y221 180 aaKnown RBP eCLIP16.53■□□□□ 0.24
CHD3-210ENST00000479080 TM4SF1P30408 202 aa16.52■□□□□ 0.24
CHD3-210ENST00000479080 ZNF652Q9Y2D9 606 aa16.52■□□□□ 0.24
CHD3-210ENST00000479080 ABCC12Q96J65 1359 aa16.51■□□□□ 0.23
CHD3-210ENST00000479080 PCCAP05165 728 aaPredicted RBP16.51■□□□□ 0.23
CHD3-210ENST00000479080 BICDL1Q6ZP65 573 aa16.51■□□□□ 0.23
CHD3-210ENST00000479080 SIRT2Q8IXJ6 389 aa16.51■□□□□ 0.23
CHD3-210ENST00000479080 FLAD1Q8NFF5 587 aa16.51■□□□□ 0.23
CHD3-210ENST00000479080 LRRFIP2Q9Y608 721 aaKnown RBP16.51■□□□□ 0.23
CHD3-210ENST00000479080 PARP10Q53GL7 1025 aa16.5■□□□□ 0.23
CHD3-210ENST00000479080 RTL5Q5HYW3 569 aaPredicted RBP16.5■□□□□ 0.23
CHD3-210ENST00000479080 ERICH6BQ5W0A0 696 aa16.5■□□□□ 0.23
CHD3-210ENST00000479080 UBE3BQ7Z3V4 1068 aa16.5■□□□□ 0.23
CHD3-210ENST00000479080 ANKRD44Q8N8A2 993 aa16.5■□□□□ 0.23
CHD3-210ENST00000479080 FAM89AQ96GI7 184 aa16.5■□□□□ 0.23
CHD3-210ENST00000479080 DDX60Q8IY21 1712 aaKnown RBP16.5■□□□□ 0.23
CHD3-210ENST00000479080 FAM177BA6PVY3 158 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 POLRMTO00411 1230 aaKnown RBP16.49■□□□□ 0.23
CHD3-210ENST00000479080 GNAI3P08754 354 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 UBTFL1P0CB47 393 aaPredicted RBP16.49■□□□□ 0.23
CHD3-210ENST00000479080 MSL1Q68DK7 614 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 CEP85Q6P2H3 762 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 ZBTB38Q8NAP3 1195 aaPredicted RBP16.49■□□□□ 0.23
CHD3-210ENST00000479080 NRXN2Q9P2S2 1712 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 TNRC6CQ9HCJ0 1690 aaKnown RBP16.49■□□□□ 0.23
CHD3-210ENST00000479080 CARMIL3Q8ND23 1372 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 LAMB2P55268 1798 aa16.49■□□□□ 0.23
CHD3-210ENST00000479080 CDHR2Q9BYE9 1310 aa16.48■□□□□ 0.23
CHD3-210ENST00000479080 MSH5O43196 834 aa16.48■□□□□ 0.23
CHD3-210ENST00000479080 FOXO4P98177 505 aa16.48■□□□□ 0.23
CHD3-210ENST00000479080 R3HDM1Q15032 1099 aaKnown RBP16.48■□□□□ 0.23
CHD3-210ENST00000479080 NUTM1Q86Y26 1132 aa16.48■□□□□ 0.23
CHD3-210ENST00000479080 C9orf78Q9NZ63 289 aaPredicted RBP16.48■□□□□ 0.23
CHD3-210ENST00000479080 COL4A1P02462 1669 aa16.47■□□□□ 0.23
CHD3-210ENST00000479080 GNAI2P04899 355 aa16.47■□□□□ 0.23
CHD3-210ENST00000479080 C3orf67Q6ZVT6 689 aa16.47■□□□□ 0.23
CHD3-210ENST00000479080 UTP14AQ9BVJ6 771 aaKnown RBP16.47■□□□□ 0.23
CHD3-210ENST00000479080 BICC1Q9H694 974 aaKnown RBP16.47■□□□□ 0.23
CHD3-210ENST00000479080 TRMT112Q9UI30 125 aaKnown RBP16.47■□□□□ 0.23
CHD3-210ENST00000479080 PNMA6EA0A0J9YXQ4 647 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 IGHDP01880 384 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 RABL6Q3YEC7 729 aaPredicted RBP16.46■□□□□ 0.23
CHD3-210ENST00000479080 ERFEQ4G0M1 354 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 CCDC24Q8N4L8 307 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 SETDB2Q96T68 719 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 PLA2G12BQ9BX93 195 aa16.46■□□□□ 0.23
CHD3-210ENST00000479080 PSDA5PKW4 1024 aaPredicted RBP16.45■□□□□ 0.22
CHD3-210ENST00000479080 MTX1Q13505 466 aa16.45■□□□□ 0.22
CHD3-210ENST00000479080 AAMPQ13685 434 aa16.45■□□□□ 0.22
CHD3-210ENST00000479080 PRR5LQ6MZQ0 368 aa16.45■□□□□ 0.22
CHD3-210ENST00000479080 PPP4R2Q9NY27 417 aa16.45■□□□□ 0.22
CHD3-210ENST00000479080 SH3TC1Q8TE82 1336 aa16.45■□□□□ 0.22
CHD3-210ENST00000479080 IRS4O14654 1257 aaPredicted RBP16.44■□□□□ 0.22
CHD3-210ENST00000479080 SERPINB2P05120 415 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 MMP10P09238 476 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 HCLS1P14317 486 aaPredicted RBP16.44■□□□□ 0.22
CHD3-210ENST00000479080 B4GALNT3Q6L9W6 998 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 PPP1R42Q7Z4L9 355 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 NLGN1Q8N2Q7 840 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 RIC1Q4ADV7 1423 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 KDM2BQ8NHM5 1336 aa16.44■□□□□ 0.22
CHD3-210ENST00000479080 RFX5P48382 616 aaPredicted RBP16.43■□□□□ 0.22
CHD3-210ENST00000479080 ATP8B2P98198 1209 aa16.43■□□□□ 0.22
CHD3-210ENST00000479080 POLA2Q14181 598 aa16.43■□□□□ 0.22
CHD3-210ENST00000479080 NBPF5PQ86XG9 351 aaPredicted RBP16.43■□□□□ 0.22
CHD3-210ENST00000479080 CSF1RP07333 972 aa16.42■□□□□ 0.22
CHD3-210ENST00000479080 SLC10A5Q5PT55 438 aa16.42■□□□□ 0.22
CHD3-210ENST00000479080 CHMP4BQ9H444 224 aaKnown RBP16.42■□□□□ 0.22
CHD3-210ENST00000479080 ANKRD31Q8N7Z5 1873 aa16.42■□□□□ 0.22
CHD3-210ENST00000479080 LRP5O75197 1615 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 ZBTB7AO95365 584 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 CTSWP56202 376 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 HDAC1Q13547 482 aaPredicted RBP16.41■□□□□ 0.22
CHD3-210ENST00000479080 LMBR1LQ6UX01 489 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 RPAP2Q8IXW5 612 aaPredicted RBP16.41■□□□□ 0.22
CHD3-210ENST00000479080 TTLL11Q8NHH1 800 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 SSH3Q8TE77 659 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 SLC16A10Q8TF71 515 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 SGIP1Q9BQI5 828 aa16.41■□□□□ 0.22
CHD3-210ENST00000479080 PDE8AO60658 829 aa16.4■□□□□ 0.22
CHD3-210ENST00000479080 CNBD1Q8NA66 436 aa16.4■□□□□ 0.22
CHD3-210ENST00000479080 NYXQ9GZU5 481 aa16.4■□□□□ 0.22
CHD3-210ENST00000479080 FAM161AQ3B820 660 aa16.39■□□□□ 0.21
CHD3-210ENST00000479080 TPTE2Q6XPS3 522 aa16.39■□□□□ 0.21
CHD3-210ENST00000479080 CCDC85AQ96PX6 553 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms