RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 NTSR2O95665 410 aa15.65■□□□□ 0.1
SYNE1-223ENST00000476519 VEGFAP15692 232 aaPredicted RBP15.65■□□□□ 0.1
SYNE1-223ENST00000476519 GRIPAP1Q4V328 841 aa15.65■□□□□ 0.1
SYNE1-223ENST00000476519 ANKRD13DQ6ZTN6 518 aa15.65■□□□□ 0.1
SYNE1-223ENST00000476519 NLRP3Q96P20 1036 aa15.65■□□□□ 0.1
SYNE1-223ENST00000476519 CHPF2Q9P2E5 772 aa15.65■□□□□ 0.1
SYNE1-223ENST00000476519 CCDC27Q2M243 656 aa15.64■□□□□ 0.09
SYNE1-223ENST00000476519 PLBD2Q8NHP8 589 aa15.64■□□□□ 0.09
SYNE1-223ENST00000476519 RPGRQ92834 1020 aaKnown RBP15.64■□□□□ 0.09
SYNE1-223ENST00000476519 RBM17Q96I25 401 aaKnown RBP15.64■□□□□ 0.09
SYNE1-223ENST00000476519 CRAMP1Q96RY5 1269 aa15.64■□□□□ 0.09
SYNE1-223ENST00000476519 LAMB4A4D0S4 1761 aa15.64■□□□□ 0.09
SYNE1-223ENST00000476519 ANKRD31Q8N7Z5 1873 aa15.63■□□□□ 0.09
SYNE1-223ENST00000476519 RIC1Q4ADV7 1423 aa15.63■□□□□ 0.09
SYNE1-223ENST00000476519 FKBP4Q02790 459 aaKnown RBP eCLIP15.63■□□□□ 0.09
SYNE1-223ENST00000476519 FSTL1Q12841 308 aa15.63■□□□□ 0.09
SYNE1-223ENST00000476519 NLRP10Q86W26 655 aa15.63■□□□□ 0.09
SYNE1-223ENST00000476519 MRS2Q9HD23 443 aa15.63■□□□□ 0.09
SYNE1-223ENST00000476519 ABCC12Q96J65 1359 aa15.62■□□□□ 0.09
SYNE1-223ENST00000476519 DLEC1Q9Y238 1755 aa15.62■□□□□ 0.09
SYNE1-223ENST00000476519 TRIM28Q13263 835 aaKnown RBP15.61■□□□□ 0.09
SYNE1-223ENST00000476519 TRMT112Q9UI30 125 aaKnown RBP15.61■□□□□ 0.09
SYNE1-223ENST00000476519 APLP1P51693 650 aa15.6■□□□□ 0.09
SYNE1-223ENST00000476519 WWC1Q8IX03 1113 aa15.6■□□□□ 0.09
SYNE1-223ENST00000476519 SYNE4Q8N205 404 aa15.6■□□□□ 0.09
SYNE1-223ENST00000476519 PSMD1Q99460 953 aa15.6■□□□□ 0.09
SYNE1-223ENST00000476519 TMX4Q9H1E5 349 aaPredicted RBP15.6■□□□□ 0.09
SYNE1-223ENST00000476519 ELL2O00472 640 aaPredicted RBP15.59■□□□□ 0.09
SYNE1-223ENST00000476519 BBOX1O75936 387 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 OLFM4Q6UX06 510 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 C8orf58Q8NAV2 365 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 SMC1BQ8NDV3 1235 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 ISCA1Q9BUE6 129 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 ZNF277Q9NRM2 450 aaPredicted RBP15.59■□□□□ 0.09
SYNE1-223ENST00000476519 SH3TC1Q8TE82 1336 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 SLX4Q8IY92 1834 aa15.59■□□□□ 0.09
SYNE1-223ENST00000476519 CCDC30Q5VVM6 783 aa15.58■□□□□ 0.08
SYNE1-223ENST00000476519 C3orf67Q6ZVT6 689 aa15.58■□□□□ 0.08
SYNE1-223ENST00000476519 IL16Q14005 1332 aa15.58■□□□□ 0.08
SYNE1-223ENST00000476519 SBF1O95248 1867 aa15.58■□□□□ 0.08
SYNE1-223ENST00000476519 COL11A2P13942 1736 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-223ENST00000476519 POTECB2RU33 542 aa15.57■□□□□ 0.08
SYNE1-223ENST00000476519 IARSP41252 1262 aaKnown RBP15.57■□□□□ 0.08
SYNE1-223ENST00000476519 GOLGA2Q08379 1002 aa15.57■□□□□ 0.08
SYNE1-223ENST00000476519 ATP6V0A2Q9Y487 856 aa15.57■□□□□ 0.08
SYNE1-223ENST00000476519 NUP98P52948 1817 aa15.57■□□□□ 0.08
SYNE1-223ENST00000476519 PPEF1O14829 653 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-223ENST00000476519 DDNO94850 711 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-223ENST00000476519 HCLS1P14317 486 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-223ENST00000476519 DDX46Q7L014 1031 aaKnown RBP15.56■□□□□ 0.08
SYNE1-223ENST00000476519 RIC3Q7Z5B4 369 aa15.56■□□□□ 0.08
SYNE1-223ENST00000476519 JDP2Q8WYK2 163 aa15.56■□□□□ 0.08
SYNE1-223ENST00000476519 VPS33BQ9H267 617 aa15.56■□□□□ 0.08
SYNE1-223ENST00000476519 IQCA1LA6NCM1 817 aa15.55■□□□□ 0.08
SYNE1-223ENST00000476519 ATP5J2-PTCD1G3V325 749 aa15.55■□□□□ 0.08
SYNE1-223ENST00000476519 FZD9O00144 591 aa15.55■□□□□ 0.08
SYNE1-223ENST00000476519 DDX58O95786 925 aaKnown RBP15.55■□□□□ 0.08
SYNE1-223ENST00000476519 HSP90B1P14625 803 aaKnown RBP15.55■□□□□ 0.08
SYNE1-223ENST00000476519 WDR63Q8IWG1 891 aa15.55■□□□□ 0.08
SYNE1-223ENST00000476519 SP8Q8IXZ3 490 aa15.55■□□□□ 0.08
SYNE1-223ENST00000476519 SF3B3Q15393 1217 aaKnown RBP15.54■□□□□ 0.08
SYNE1-223ENST00000476519 TMC4Q7Z404 712 aa15.54■□□□□ 0.08
SYNE1-223ENST00000476519 TSPYL6Q8N831 410 aa15.54■□□□□ 0.08
SYNE1-223ENST00000476519 L3MBTL3Q96JM7 780 aaPredicted RBP15.54■□□□□ 0.08
SYNE1-223ENST00000476519 PHAXQ9H814 394 aaKnown RBP15.54■□□□□ 0.08
SYNE1-223ENST00000476519 FER1L6Q2WGJ9 1857 aa15.54■□□□□ 0.08
SYNE1-223ENST00000476519 ABCC4O15439 1325 aa15.53■□□□□ 0.08
SYNE1-223ENST00000476519 CCDC191Q8NCU4 936 aa15.53■□□□□ 0.08
SYNE1-223ENST00000476519 TSR2Q969E8 191 aaKnown RBP15.53■□□□□ 0.08
SYNE1-223ENST00000476519 FAM89AQ96GI7 184 aa15.53■□□□□ 0.08
SYNE1-223ENST00000476519 SNED1Q8TER0 1413 aa15.52■□□□□ 0.08
SYNE1-223ENST00000476519 TCERG1O14776 1098 aaKnown RBP15.52■□□□□ 0.08
SYNE1-223ENST00000476519 GRAPQ13588 217 aa15.52■□□□□ 0.08
SYNE1-223ENST00000476519 DNAJC5GQ8N7S2 189 aa15.52■□□□□ 0.08
SYNE1-223ENST00000476519 ZBTB38Q8NAP3 1195 aaPredicted RBP15.52■□□□□ 0.08
SYNE1-223ENST00000476519 SUPT20HQ8NEM7 779 aa15.52■□□□□ 0.08
SYNE1-223ENST00000476519 GRAPLQ8TC17 118 aaPredicted RBP15.52■□□□□ 0.08
SYNE1-223ENST00000476519 STK31Q9BXU1 1019 aa15.52■□□□□ 0.08
SYNE1-223ENST00000476519 RTFDC1Q9BY42 306 aaPredicted RBP15.52■□□□□ 0.08
SYNE1-223ENST00000476519 IRS4O14654 1257 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-223ENST00000476519 EIF6P56537 245 aaKnown RBP15.51■□□□□ 0.07
SYNE1-223ENST00000476519 TWISTNBQ3B726 338 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-223ENST00000476519 GPC2Q8N158 579 aa15.51■□□□□ 0.07
SYNE1-223ENST00000476519 LARGE2Q8N3Y3 721 aa15.51■□□□□ 0.07
SYNE1-223ENST00000476519 METTL22Q9BUU2 404 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-223ENST00000476519 KSR2Q6VAB6 950 aa15.5■□□□□ 0.07
SYNE1-223ENST00000476519 MPNDQ8N594 471 aa15.5■□□□□ 0.07
SYNE1-223ENST00000476519 MYD88Q99836 296 aa15.5■□□□□ 0.07
SYNE1-223ENST00000476519 TAF1DQ9H5J8 278 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-223ENST00000476519 CWC25Q9NXE8 425 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-223ENST00000476519 ARFGEF2Q9Y6D5 1785 aa15.49■□□□□ 0.07
SYNE1-223ENST00000476519 TNRC6CQ9HCJ0 1690 aaKnown RBP15.49■□□□□ 0.07
SYNE1-223ENST00000476519 SLC4A2P04920 1241 aa15.49■□□□□ 0.07
SYNE1-223ENST00000476519 CHADLQ6NUI6 762 aa15.49■□□□□ 0.07
SYNE1-223ENST00000476519 DPP8Q6V1X1 898 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-223ENST00000476519 HACL1Q9UJ83 578 aa15.49■□□□□ 0.07
SYNE1-223ENST00000476519 ZNF541Q9H0D2 1346 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 PI4KAP2A4QPH2 592 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 PPIP5K2O43314 1243 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 PCCAP05165 728 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms