RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 SYCP2Q9BX26 1530 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 USP32Q8NFA0 1604 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 EIF5P55010 431 aaKnown RBP13.33□□□□□ -0.28
U2AF1-209ENST00000475639 MAP9Q49MG5 647 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 KLHL34Q8N239 644 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 CACTINQ8WUQ7 758 aaKnown RBP13.33□□□□□ -0.28
U2AF1-209ENST00000475639 RASSF4Q9H2L5 321 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 TMX1Q9H3N1 280 aa13.33□□□□□ -0.28
U2AF1-209ENST00000475639 GSTTP1A0A1W2PQM5 241 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 USP27XA6NNY8 438 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 TRIM21P19474 475 aaKnown RBP13.32□□□□□ -0.28
U2AF1-209ENST00000475639 MMP14P50281 582 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 ANKRD1Q15327 319 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 FAM200AQ8TCP9 573 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 DCAF8L1A6NGE4 600 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 SSBP05455 408 aaKnown RBP eCLIP13.32□□□□□ -0.28
U2AF1-209ENST00000475639 SSR1P43307 286 aaKnown RBP13.32□□□□□ -0.28
U2AF1-209ENST00000475639 ERO1AQ96HE7 468 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 RGS12O14924 1447 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC175P0C221 793 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 KIAA1328Q86T90 577 aa13.32□□□□□ -0.28
U2AF1-209ENST00000475639 SYT10Q6XYQ8 523 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 HOOK3Q86VS8 718 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC148Q8NFR7 591 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 UPF3BQ9BZI7 483 aaKnown RBP13.31□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC113Q9H0I3 377 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 SBNO2Q9Y2G9 1366 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 ABCA6Q8N139 1617 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 VAMP4O75379 141 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 BMS1Q14692 1282 aaKnown RBP13.31□□□□□ -0.28
U2AF1-209ENST00000475639 NACAP1Q9BZK3 213 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 TRPM2O94759 1503 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 PTPRCP08575 1304 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 ATP10BO94823 1461 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
U2AF1-209ENST00000475639 SPECC1Q5M775 1068 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 TSPYL6Q8N831 410 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 ZNF428Q96B54 188 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 RNF216Q9NWF9 866 aaPredicted RBP13.31□□□□□ -0.28
U2AF1-209ENST00000475639 TRIM66O15016 1216 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 MUM1L1Q5H9M0 696 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 POLKQ9UBT6 870 aa13.31□□□□□ -0.28
U2AF1-209ENST00000475639 ZSCAN22P10073 491 aaPredicted RBP13.3□□□□□ -0.28
U2AF1-209ENST00000475639 H2AFXP16104 143 aaPredicted RBP13.3□□□□□ -0.28
U2AF1-209ENST00000475639 PSEN1P49768 467 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 MICALCLQ6ZW33 695 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 TICAM2Q86XR7 235 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 SLC52A1Q9NWF4 448 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 MYO3AQ8NEV4 1616 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 PLA2G4AP47712 749 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 GYS2P54840 703 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC57Q2TAC2 916 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 NYAP1Q6ZVC0 841 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 PLA2G4DQ86XP0 818 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 LCMT1Q9UIC8 334 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 CYP46A1Q9Y6A2 500 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC144BQ3MJ40 725 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC144CPQ8IYA2 1237 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 MRVI1Q9Y6F6 885 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 ATP2B2Q01814 1243 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 ERC1Q8IUD2 1116 aa13.3□□□□□ -0.28
U2AF1-209ENST00000475639 LOC102724159A0A0B4J2E5 919 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 PPP1R12BO60237 982 aaPredicted RBP13.29□□□□□ -0.28
U2AF1-209ENST00000475639 PWP2Q15269 919 aaKnown RBP13.29□□□□□ -0.28
U2AF1-209ENST00000475639 INO80Q9ULG1 1556 aaPredicted RBP13.29□□□□□ -0.28
U2AF1-209ENST00000475639 ZNF75DP51815 510 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 DNAI2Q9GZS0 605 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 GNL3LQ9NVN8 582 aaKnown RBP13.29□□□□□ -0.28
U2AF1-209ENST00000475639 ATP10DQ9P241 1426 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 PREX2Q70Z35 1606 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 C10orf67Q8IYJ2 551 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 CFAP57Q96MR6 1250 aa13.29□□□□□ -0.28
U2AF1-209ENST00000475639 MYO1CO00159 1063 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 PNMA6AP0CW24 399 aaPredicted RBP13.28□□□□□ -0.28
U2AF1-209ENST00000475639 MCM3P25205 808 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 KRBA2Q6ZNG9 492 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 IFFO1Q0D2I5 559 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 SLU7O95391 586 aaKnown RBP13.28□□□□□ -0.28
U2AF1-209ENST00000475639 IBSPP21815 317 aaPredicted RBP13.28□□□□□ -0.28
U2AF1-209ENST00000475639 PAFAH1B1P43034 410 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 LARP1BQ659C4 914 aaKnown RBP13.28□□□□□ -0.28
U2AF1-209ENST00000475639 DDX11Q96FC9 970 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 COL3A1P02461 1466 aaPredicted RBP13.28□□□□□ -0.28
U2AF1-209ENST00000475639 ADGRF5Q8IZF2 1346 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 ANKRD18BA2A2Z9 1011 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 CLCN6P51797 869 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 PTPN14Q15678 1187 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 SIRT1Q96EB6 747 aa13.28□□□□□ -0.28
U2AF1-209ENST00000475639 SYT1P21579 422 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 TYRO3Q06418 890 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 VPS36Q86VN1 386 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 CBX8Q9HC52 389 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 STX6O43752 255 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 F13A1P00488 732 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 GTF2A1P52655 376 aaPredicted RBP13.27□□□□□ -0.28
U2AF1-209ENST00000475639 ST5P78524 1137 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 PSME1Q06323 249 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 ERCC6LQ2NKX8 1250 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 ANKRD44Q8N8A2 993 aa13.27□□□□□ -0.28
U2AF1-209ENST00000475639 ESYT1Q9BSJ8 1104 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms