RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 CEMIPQ8WUJ3 1361 aa6.94□□□□□ -1.3
SNRNP40-204ENST00000474025 KLRG2A4D1S0 409 aaPredicted RBP6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 TMEM88BA6NKF7 163 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 TTLL13PA6NNM8 815 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 GNAT3A8MTJ3 354 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 NPHP1O15259 732 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 RGS19P49795 217 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 FKBP4Q02790 459 aaKnown RBP eCLIP6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 CCDC93Q567U6 631 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 DZIP3Q86Y13 1208 aaKnown RBP6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 GAS2L2Q8NHY3 880 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 FMNL2Q96PY5 1086 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 ZNF277Q9NRM2 450 aaPredicted RBP6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 WBP1LQ9NX94 342 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 SNED1Q8TER0 1413 aa6.93□□□□□ -1.3
SNRNP40-204ENST00000474025 RASSF10A6NK89 507 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 PER1O15534 1290 aaPredicted RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 KCNQ3O43525 872 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 NPR1P16066 1061 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 PIP4K2AP48426 406 aaPredicted RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 LBX1P52954 281 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 MAP2K1Q02750 393 aaPredicted RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 EAPPQ56P03 285 aaPredicted RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 DCAF8Q5TAQ9 597 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 OLFM4Q6UX06 510 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 CLEC4GQ6UXB4 293 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 MAMSTRQ6ZN01 415 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 NPM2Q86SE8 214 aaKnown RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 NBPF5PQ86XG9 351 aaPredicted RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 ABHD8Q96I13 439 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 HACL1Q9UJ83 578 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 KIF7Q2M1P5 1343 aa6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 MKI67P46013 3256 aaKnown RBP6.92□□□□□ -1.3
SNRNP40-204ENST00000474025 PRAMEF22A3QJZ6 481 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 FZD9O00144 591 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 HSPA8P11142 646 aaKnown RBP6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 EPHX2P34913 555 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 CC2D1BQ5T0F9 858 aaKnown RBP6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 IFNL1Q8IU54 200 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 BEGAINQ9BUH8 593 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 ZNF652Q9Y2D9 606 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 RNF123Q5XPI4 1314 aa6.91□□□□□ -1.3
SNRNP40-204ENST00000474025 THSD7BQ9C0I4 1608 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 POTEFA5A3E0 1075 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 BTBD11A6QL63 1104 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 U2SURPO15042 1029 aaKnown RBP6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 RGL2O15211 777 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 IARSP41252 1262 aaKnown RBP6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 IER5LQ5T953 404 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 MAP1SQ66K74 1059 aaPredicted RBP6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 PNMA8AQ86V59 439 aaPredicted RBP6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 RTKN2Q8IZC4 609 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 CNTROBQ8N137 903 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 GPC2Q8N158 579 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 PHACTR3Q96KR7 559 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 RSPH6AQ9H0K4 717 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 USP16Q9Y5T5 823 aa6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 WDR33Q9C0J8 1336 aaKnown RBP6.9□□□□□ -1.3
SNRNP40-204ENST00000474025 NPC1L1Q9UHC9 1359 aa6.9□□□□□ -1.31
SNRNP40-204ENST00000474025 COL4A5P29400 1685 aa6.9□□□□□ -1.31
SNRNP40-204ENST00000474025 CENPFP49454 3210 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 HTTP42858 3142 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 NBPF26B4DH59 902 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 GSE1Q14687 1217 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 DEFB115Q30KQ5 88 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 NBPF10Q6P3W6 841 aaKnown RBP6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 TPTE2Q6XPS3 522 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 SYNE4Q8N205 404 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 NBPF15Q8N660 670 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 PSMD1Q99460 953 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 PCGF6Q9BYE7 350 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 DDX21Q9NR30 783 aaKnown RBP eCLIP6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 NIP7Q9Y221 180 aaKnown RBP eCLIP6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 ABCC12Q96J65 1359 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 LTBP1Q14766 1721 aa6.89□□□□□ -1.31
SNRNP40-204ENST00000474025 CCDC85CA6NKD9 419 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 FAM177BA6PVY3 158 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 SNRPA1P09661 255 aaKnown RBP6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 ALDH1B1P30837 517 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 PRKAR2BP31323 418 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 SCNN1DP51172 638 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 CRY2Q49AN0 593 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 ABT1Q9ULW3 272 aaKnown RBP6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 TRIM35Q9UPQ4 493 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 BRCA2P51587 3418 aa6.88□□□□□ -1.31
SNRNP40-204ENST00000474025 RIC1Q4ADV7 1423 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 PYGBP11216 843 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 FMR1Q06787 632 aaKnown RBP eCLIP6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 HLFQ16534 295 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 MCM10Q7L590 875 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 SLC51AQ86UW1 340 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 JDP2Q8WYK2 163 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 CAPNS2Q96L46 248 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 GJA3Q9Y6H8 435 aa6.87□□□□□ -1.31
SNRNP40-204ENST00000474025 IBTKQ9P2D0 1353 aaPredicted RBP6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 TRAF5O00463 557 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 CA12O43570 354 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 LMOD1P29536 600 aaPredicted RBP6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 HOXA10P31260 410 aaPredicted RBP6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 EPS15P42566 896 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms