RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 SENP3-EIF4A1A0A087X0R7 540 aa15.47■□□□□ 0.07
SYNE1-221ENST00000472563 CCDC93Q567U6 631 aa15.47■□□□□ 0.07
SYNE1-221ENST00000472563 RPGRQ92834 1020 aaKnown RBP15.47■□□□□ 0.07
SYNE1-221ENST00000472563 NLRP3Q96P20 1036 aa15.47■□□□□ 0.07
SYNE1-221ENST00000472563 NMRK2Q9NPI5 230 aa15.47■□□□□ 0.07
SYNE1-221ENST00000472563 ARFGEF1Q9Y6D6 1849 aa15.47■□□□□ 0.07
SYNE1-221ENST00000472563 ANKRD31Q8N7Z5 1873 aa15.46■□□□□ 0.07
SYNE1-221ENST00000472563 RTKN2Q8IZC4 609 aa15.46■□□□□ 0.07
SYNE1-221ENST00000472563 TSR2Q969E8 191 aaKnown RBP15.46■□□□□ 0.07
SYNE1-221ENST00000472563 CRAMP1Q96RY5 1269 aa15.46■□□□□ 0.07
SYNE1-221ENST00000472563 DLEC1Q9Y238 1755 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 TRIM28Q13263 835 aaKnown RBP15.45■□□□□ 0.06
SYNE1-221ENST00000472563 CCDC30Q5VVM6 783 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 CC2D2BQ6DHV5 1058 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 C3orf67Q6ZVT6 689 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 WDR63Q8IWG1 891 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 TSPYL6Q8N831 410 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 RBM17Q96I25 401 aaKnown RBP15.45■□□□□ 0.06
SYNE1-221ENST00000472563 ISCA1Q9BUE6 129 aa15.45■□□□□ 0.06
SYNE1-221ENST00000472563 TRMT112Q9UI30 125 aaKnown RBP15.45■□□□□ 0.06
SYNE1-221ENST00000472563 SH3TC1Q8TE82 1336 aa15.44■□□□□ 0.06
SYNE1-221ENST00000472563 GLTPD2A6NH11 291 aa15.44■□□□□ 0.06
SYNE1-221ENST00000472563 TOMM70O94826 608 aa15.44■□□□□ 0.06
SYNE1-221ENST00000472563 GOLGA2Q08379 1002 aa15.44■□□□□ 0.06
SYNE1-221ENST00000472563 FAM9BQ8IZU0 186 aa15.44■□□□□ 0.06
SYNE1-221ENST00000472563 PHAXQ9H814 394 aaKnown RBP15.44■□□□□ 0.06
SYNE1-221ENST00000472563 COL11A2P13942 1736 aaPredicted RBP15.43■□□□□ 0.06
SYNE1-221ENST00000472563 FKBP4Q02790 459 aaKnown RBP eCLIP15.43■□□□□ 0.06
SYNE1-221ENST00000472563 GRIPAP1Q4V328 841 aa15.43■□□□□ 0.06
SYNE1-221ENST00000472563 OLFM4Q6UX06 510 aa15.43■□□□□ 0.06
SYNE1-221ENST00000472563 RIC3Q7Z5B4 369 aa15.43■□□□□ 0.06
SYNE1-221ENST00000472563 HCLS1P14317 486 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-221ENST00000472563 DPY19L2Q6NUT2 758 aa15.42■□□□□ 0.06
SYNE1-221ENST00000472563 SYNE4Q8N205 404 aa15.42■□□□□ 0.06
SYNE1-221ENST00000472563 SALL2Q9Y467 1007 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-221ENST00000472563 ATP5J2-PTCD1G3V325 749 aa15.41■□□□□ 0.06
SYNE1-221ENST00000472563 DDX58O95786 925 aaKnown RBP15.41■□□□□ 0.06
SYNE1-221ENST00000472563 TWISTNBQ3B726 338 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-221ENST00000472563 PSMD1Q99460 953 aa15.41■□□□□ 0.06
SYNE1-221ENST00000472563 RRAGCQ9HB90 399 aa15.41■□□□□ 0.06
SYNE1-221ENST00000472563 PPEF1O14829 653 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-221ENST00000472563 BBOX1O75936 387 aa15.4■□□□□ 0.06
SYNE1-221ENST00000472563 FAM89AQ96GI7 184 aa15.4■□□□□ 0.06
SYNE1-221ENST00000472563 STK31Q9BXU1 1019 aa15.4■□□□□ 0.06
SYNE1-221ENST00000472563 FANCIQ9NVI1 1328 aa15.4■□□□□ 0.06
SYNE1-221ENST00000472563 VEGFAP15692 232 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-221ENST00000472563 C16orf71Q8IYS4 520 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-221ENST00000472563 RBM46Q8TBY0 533 aaKnown RBP15.39■□□□□ 0.05
SYNE1-221ENST00000472563 ZNF277Q9NRM2 450 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-221ENST00000472563 SNED1Q8TER0 1413 aa15.39■□□□□ 0.05
SYNE1-221ENST00000472563 SLX4Q8IY92 1834 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 HSPA6P17066 643 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 SF3B3Q15393 1217 aaKnown RBP15.38■□□□□ 0.05
SYNE1-221ENST00000472563 KSR2Q6VAB6 950 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 DDX46Q7L014 1031 aaKnown RBP15.38■□□□□ 0.05
SYNE1-221ENST00000472563 CCDC191Q8NCU4 936 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 MYD88Q99836 296 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 METTL22Q9BUU2 404 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-221ENST00000472563 TMX4Q9H1E5 349 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-221ENST00000472563 ATP6V0A2Q9Y487 856 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 ABCC4O15439 1325 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 NUP98P52948 1817 aa15.38■□□□□ 0.05
SYNE1-221ENST00000472563 TNRC6CQ9HCJ0 1690 aaKnown RBP15.38■□□□□ 0.05
SYNE1-221ENST00000472563 SLC4A2P04920 1241 aa15.37■□□□□ 0.05
SYNE1-221ENST00000472563 IARSP41252 1262 aaKnown RBP15.37■□□□□ 0.05
SYNE1-221ENST00000472563 ZBTB38Q8NAP3 1195 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-221ENST00000472563 ZNF428Q96B54 188 aa15.37■□□□□ 0.05
SYNE1-221ENST00000472563 MYH16Q9H6N6 1097 aa15.37■□□□□ 0.05
SYNE1-221ENST00000472563 PI4KAP2A4QPH2 592 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 POTECB2RU33 542 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 IRS4O14654 1257 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 TCERG1O14776 1098 aaKnown RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 VAMP4O75379 141 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 HSP90B1P14625 803 aaKnown RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 EXOSC9Q06265 439 aaKnown RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 GRAPQ13588 217 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 SP8Q8IXZ3 490 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 PI4KAP1Q8N8J0 262 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 GRAPLQ8TC17 118 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 SPINK5Q9NQ38 1064 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-221ENST00000472563 MAP3K2Q9Y2U5 619 aa15.36■□□□□ 0.05
SYNE1-221ENST00000472563 FZD9O00144 591 aa15.35■□□□□ 0.05
SYNE1-221ENST00000472563 DDNO94850 711 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-221ENST00000472563 PCCAP05165 728 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-221ENST00000472563 FSTL1Q12841 308 aa15.35■□□□□ 0.05
SYNE1-221ENST00000472563 TMC4Q7Z404 712 aa15.35■□□□□ 0.05
SYNE1-221ENST00000472563 CWC25Q9NXE8 425 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-221ENST00000472563 RTL5Q5HYW3 569 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-221ENST00000472563 G2E3Q7L622 706 aa15.34■□□□□ 0.05
SYNE1-221ENST00000472563 SLC51AQ86UW1 340 aa15.34■□□□□ 0.05
SYNE1-221ENST00000472563 JDP2Q8WYK2 163 aa15.34■□□□□ 0.05
SYNE1-221ENST00000472563 L3MBTL3Q96JM7 780 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-221ENST00000472563 VPS33BQ9H267 617 aa15.34■□□□□ 0.05
SYNE1-221ENST00000472563 ZNF521Q96K83 1311 aa15.34■□□□□ 0.05
SYNE1-221ENST00000472563 IGKV5-2P06315 115 aa15.33■□□□□ 0.04
SYNE1-221ENST00000472563 NEXNQ0ZGT2 675 aa15.33■□□□□ 0.04
SYNE1-221ENST00000472563 FLIIQ13045 1269 aa15.33■□□□□ 0.04
SYNE1-221ENST00000472563 SMC1BQ8NDV3 1235 aa15.33■□□□□ 0.04
SYNE1-221ENST00000472563 SUPT20HQ8NEM7 779 aa15.33■□□□□ 0.04
SYNE1-221ENST00000472563 RTFDC1Q9BY42 306 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms