RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NPC1L1Q9UHC9 1359 aa24.69■■□□□ 1.54
SHH-205ENST00000472308 ECE1P42892 770 aa24.69■■□□□ 1.54
SHH-205ENST00000472308 EIF6P56537 245 aaKnown RBP24.69■■□□□ 1.54
SHH-205ENST00000472308 MLLT1Q03111 559 aaPredicted RBP24.69■■□□□ 1.54
SHH-205ENST00000472308 PAXIP1Q6ZW49 1069 aaPredicted RBP24.69■■□□□ 1.54
SHH-205ENST00000472308 MCM10Q7L590 875 aa24.69■■□□□ 1.54
SHH-205ENST00000472308 LMOD1P29536 600 aaPredicted RBP24.68■■□□□ 1.54
SHH-205ENST00000472308 GRM1Q13255 1194 aa24.68■■□□□ 1.54
SHH-205ENST00000472308 NUTM1Q86Y26 1132 aa24.68■■□□□ 1.54
SHH-205ENST00000472308 TSKSQ9UJT2 592 aa24.68■■□□□ 1.54
SHH-205ENST00000472308 TLL2Q9Y6L7 1015 aa24.68■■□□□ 1.54
SHH-205ENST00000472308 CC2D2BQ6DHV5 1058 aa24.67■■□□□ 1.54
SHH-205ENST00000472308 TRPM7Q96QT4 1865 aa24.66■■□□□ 1.54
SHH-205ENST00000472308 GTF2E1P29083 439 aaPredicted RBP24.66■■□□□ 1.54
SHH-205ENST00000472308 USP50Q70EL3 339 aaPredicted RBP24.66■■□□□ 1.54
SHH-205ENST00000472308 BEGAINQ9BUH8 593 aa24.66■■□□□ 1.54
SHH-205ENST00000472308 RIC1Q4ADV7 1423 aa24.66■■□□□ 1.54
SHH-205ENST00000472308 AOC2O75106 756 aa24.65■■□□□ 1.54
SHH-205ENST00000472308 HOXA10P31260 410 aaPredicted RBP24.65■■□□□ 1.54
SHH-205ENST00000472308 CNGB1Q14028 1251 aaPredicted RBP24.65■■□□□ 1.54
SHH-205ENST00000472308 LARGE2Q8N3Y3 721 aa24.65■■□□□ 1.54
SHH-205ENST00000472308 LAMB4A4D0S4 1761 aa24.65■■□□□ 1.54
SHH-205ENST00000472308 TNRC18O15417 2968 aaPredicted RBP24.64■■□□□ 1.54
SHH-205ENST00000472308 DCTN1Q14203 1278 aa24.64■■□□□ 1.54
SHH-205ENST00000472308 NYXQ9GZU5 481 aa24.63■■□□□ 1.53
SHH-205ENST00000472308 MAP2K2P36507 400 aa24.62■■□□□ 1.53
SHH-205ENST00000472308 RTF1Q92541 710 aaKnown RBP24.62■■□□□ 1.53
SHH-205ENST00000472308 UBN2Q6ZU65 1347 aa24.61■■□□□ 1.53
SHH-205ENST00000472308 RPGRQ92834 1020 aaKnown RBP24.61■■□□□ 1.53
SHH-205ENST00000472308 IBTKQ9P2D0 1353 aaPredicted RBP24.61■■□□□ 1.53
SHH-205ENST00000472308 C3orf67Q6ZVT6 689 aa24.6■■□□□ 1.53
SHH-205ENST00000472308 SAPCD2Q86UD0 394 aa24.6■■□□□ 1.53
SHH-205ENST00000472308 GPRC5DQ9NZD1 345 aa24.6■■□□□ 1.53
SHH-205ENST00000472308 NUP98P52948 1817 aa24.6■■□□□ 1.53
SHH-205ENST00000472308 ERVV-1B6SEH8 477 aa24.59■■□□□ 1.53
SHH-205ENST00000472308 PPEF1O14829 653 aaPredicted RBP24.59■■□□□ 1.53
SHH-205ENST00000472308 GRIPAP1Q4V328 841 aa24.59■■□□□ 1.53
SHH-205ENST00000472308 NIM1KQ8IY84 436 aa24.59■■□□□ 1.53
SHH-205ENST00000472308 MCOLN1Q9GZU1 580 aa24.59■■□□□ 1.53
SHH-205ENST00000472308 MAP3K15Q6ZN16 1313 aa24.59■■□□□ 1.53
SHH-205ENST00000472308 TCERG1O14776 1098 aaKnown RBP24.58■■□□□ 1.53
SHH-205ENST00000472308 TTLL7Q6ZT98 887 aa24.58■■□□□ 1.53
SHH-205ENST00000472308 NGEFQ8N5V2 710 aa24.58■■□□□ 1.53
SHH-205ENST00000472308 CRAMP1Q96RY5 1269 aa24.58■■□□□ 1.53
SHH-205ENST00000472308 ADARB2Q9NS39 739 aaKnown RBP24.58■■□□□ 1.53
SHH-205ENST00000472308 MIS18AQ9NYP9 233 aa24.58■■□□□ 1.53
SHH-205ENST00000472308 GPTP24298 496 aa24.57■■□□□ 1.52
SHH-205ENST00000472308 AOC3Q16853 763 aa24.57■■□□□ 1.52
SHH-205ENST00000472308 PPIP5K2O43314 1243 aa24.56■■□□□ 1.52
SHH-205ENST00000472308 CELF2O95319 508 aaKnown RBP24.56■■□□□ 1.52
SHH-205ENST00000472308 SUSD4Q5VX71 490 aa24.56■■□□□ 1.52
SHH-205ENST00000472308 GLIS2Q9BZE0 524 aaPredicted RBP24.56■■□□□ 1.52
SHH-205ENST00000472308 CA12O43570 354 aa24.55■■□□□ 1.52
SHH-205ENST00000472308 HTATSF1O43719 755 aaKnown RBP24.55■■□□□ 1.52
SHH-205ENST00000472308 NTSR2O95665 410 aa24.55■■□□□ 1.52
SHH-205ENST00000472308 BRPF1P55201 1214 aaPredicted RBP24.55■■□□□ 1.52
SHH-205ENST00000472308 TAF7Q15545 349 aaPredicted RBP24.55■■□□□ 1.52
SHH-205ENST00000472308 RBM17Q96I25 401 aaKnown RBP24.55■■□□□ 1.52
SHH-205ENST00000472308 HHIPL1Q96JK4 782 aa24.55■■□□□ 1.52
SHH-205ENST00000472308 U2AF1L5P0DN76 240 aaPredicted RBP24.54■■□□□ 1.52
SHH-205ENST00000472308 U2AF1Q01081 240 aaKnown RBP eCLIP24.54■■□□□ 1.52
SHH-205ENST00000472308 CXCL9Q07325 125 aa24.54■■□□□ 1.52
SHH-205ENST00000472308 CFAP53Q96M91 514 aa24.54■■□□□ 1.52
SHH-205ENST00000472308 KDM3BQ7LBC6 1761 aa24.54■■□□□ 1.52
SHH-205ENST00000472308 GMPSP49915 693 aaPredicted RBP24.53■■□□□ 1.52
SHH-205ENST00000472308 ZBTB3Q9H5J0 574 aa24.53■■□□□ 1.52
SHH-205ENST00000472308 PCDH10Q9P2E7 1040 aa24.53■■□□□ 1.52
SHH-205ENST00000472308 PGAP2Q9UHJ9 254 aa24.53■■□□□ 1.52
SHH-205ENST00000472308 CASP8AP2Q9UKL3 1982 aa24.53■■□□□ 1.52
SHH-205ENST00000472308 KIF6Q6ZMV9 814 aa24.52■■□□□ 1.52
SHH-205ENST00000472308 ZNF34Q8IZ26 560 aa24.52■■□□□ 1.52
SHH-205ENST00000472308 CFAP44Q96MT7 982 aa24.52■■□□□ 1.52
SHH-205ENST00000472308 ZNRF3Q9ULT6 936 aa24.52■■□□□ 1.52
SHH-205ENST00000472308 HIRAP54198 1017 aaPredicted RBP24.51■■□□□ 1.51
SHH-205ENST00000472308 NUDCQ9Y266 331 aa24.51■■□□□ 1.51
SHH-205ENST00000472308 RRP7AQ9Y3A4 280 aaKnown RBP24.51■■□□□ 1.51
SHH-205ENST00000472308 ATP6V0A2Q9Y487 856 aa24.51■■□□□ 1.51
SHH-205ENST00000472308 CIAPIN1Q6FI81 312 aa24.5■■□□□ 1.51
SHH-205ENST00000472308 ZIC5Q96T25 663 aa24.5■■□□□ 1.51
SHH-205ENST00000472308 RTFDC1Q9BY42 306 aaPredicted RBP24.5■■□□□ 1.51
SHH-205ENST00000472308 VPS33BQ9H267 617 aa24.5■■□□□ 1.51
SHH-205ENST00000472308 MYL6BP14649 208 aa24.49■■□□□ 1.51
SHH-205ENST00000472308 DGKZQ13574 1117 aa24.49■■□□□ 1.51
SHH-205ENST00000472308 ABCC4O15439 1325 aa24.48■■□□□ 1.51
SHH-205ENST00000472308 TRPM4Q8TD43 1214 aa24.48■■□□□ 1.51
SHH-205ENST00000472308 CDHR2Q9BYE9 1310 aa24.48■■□□□ 1.51
SHH-205ENST00000472308 ZNF408Q9H9D4 720 aa24.48■■□□□ 1.51
SHH-205ENST00000472308 EIF4A1P60842 406 aaKnown RBP24.47■■□□□ 1.51
SHH-205ENST00000472308 GIGYF2Q6Y7W6 1299 aaKnown RBP24.47■■□□□ 1.51
SHH-205ENST00000472308 SHTN1A0MZ66 631 aa24.46■■□□□ 1.51
SHH-205ENST00000472308 ZC3H15Q8WU90 426 aaKnown RBP24.46■■□□□ 1.51
SHH-205ENST00000472308 PPP2R1AP30153 589 aa24.45■■□□□ 1.5
SHH-205ENST00000472308 NLRP3Q96P20 1036 aa24.45■■□□□ 1.5
SHH-205ENST00000472308 RAD17O75943 681 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 KIAA2012Q0VF49 1180 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 NOGQ13253 232 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 SLC10A5Q5PT55 438 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 DLK2Q6UY11 383 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 SUPT20HQ8NEM7 779 aa24.44■■□□□ 1.5
SHH-205ENST00000472308 PDE4DIPQ5VU43 2346 aa24.44■■□□□ 1.5
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