RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 LINS1Q8NG48 757 aa18.78■□□□□ 0.6
COL9A3-209ENST00000469852 PARP3Q9Y6F1 533 aa18.78■□□□□ 0.6
COL9A3-209ENST00000469852 ANKRD31Q8N7Z5 1873 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 IPO8O15397 1037 aaKnown RBP18.77■□□□□ 0.6
COL9A3-209ENST00000469852 POLD1P28340 1107 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 NEXNQ0ZGT2 675 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 PARP10Q53GL7 1025 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 PRR5LQ6MZQ0 368 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 NUTM1Q86Y26 1132 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 JARID2Q92833 1246 aaPredicted RBP18.77■□□□□ 0.6
COL9A3-209ENST00000469852 ABCC12Q96J65 1359 aa18.77■□□□□ 0.6
COL9A3-209ENST00000469852 UTRNP46939 3433 aa18.77■□□□□ 0.59
COL9A3-209ENST00000469852 TNRC6CQ9HCJ0 1690 aaKnown RBP18.76■□□□□ 0.59
COL9A3-209ENST00000469852 C20orf194Q5TEA3 1177 aa18.76■□□□□ 0.59
COL9A3-209ENST00000469852 NBPF5PQ86XG9 351 aaPredicted RBP18.76■□□□□ 0.59
COL9A3-209ENST00000469852 IBTKQ9P2D0 1353 aaPredicted RBP18.76■□□□□ 0.59
COL9A3-209ENST00000469852 DDX60Q8IY21 1712 aaKnown RBP18.75■□□□□ 0.59
COL9A3-209ENST00000469852 KIF13BQ9NQT8 1826 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 GCKRQ14397 625 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 ERFEQ4G0M1 354 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 RTL5Q5HYW3 569 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-209ENST00000469852 CCDC191Q8NCU4 936 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 PANK1Q8TE04 598 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 SRCIN1Q9C0H9 1055 aa18.75■□□□□ 0.59
COL9A3-209ENST00000469852 CWC25Q9NXE8 425 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-209ENST00000469852 C10orf71Q711Q0 1435 aa18.74■□□□□ 0.59
COL9A3-209ENST00000469852 RRP1P56182 461 aaKnown RBP18.74■□□□□ 0.59
COL9A3-209ENST00000469852 TMEM57Q8N5G2 664 aa18.74■□□□□ 0.59
COL9A3-209ENST00000469852 CNBD1Q8NA66 436 aa18.74■□□□□ 0.59
COL9A3-209ENST00000469852 FAM89AQ96GI7 184 aa18.74■□□□□ 0.59
COL9A3-209ENST00000469852 UTP14AQ9BVJ6 771 aaKnown RBP18.74■□□□□ 0.59
COL9A3-209ENST00000469852 TRMT112Q9UI30 125 aaKnown RBP18.74■□□□□ 0.59
COL9A3-209ENST00000469852 KIAA1551Q9HCM1 1747 aa18.74■□□□□ 0.59
COL9A3-209ENST00000469852 LAMB2P55268 1798 aa18.73■□□□□ 0.59
COL9A3-209ENST00000469852 ALDH1L1O75891 902 aa18.73■□□□□ 0.59
COL9A3-209ENST00000469852 INTS3Q68E01 1043 aaKnown RBP18.73■□□□□ 0.59
COL9A3-209ENST00000469852 PPP1R42Q7Z4L9 355 aa18.73■□□□□ 0.59
COL9A3-209ENST00000469852 DZIP1LQ8IYY4 767 aaKnown RBP18.73■□□□□ 0.59
COL9A3-209ENST00000469852 TPTE2Q6XPS3 522 aa18.72■□□□□ 0.59
COL9A3-209ENST00000469852 NYXQ9GZU5 481 aa18.72■□□□□ 0.59
COL9A3-209ENST00000469852 SUPT16HQ9Y5B9 1047 aaKnown RBP18.72■□□□□ 0.59
COL9A3-209ENST00000469852 RNF123Q5XPI4 1314 aa18.72■□□□□ 0.59
COL9A3-209ENST00000469852 COL11A2P13942 1736 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-209ENST00000469852 H7C1W4 665 aa18.71■□□□□ 0.59
COL9A3-209ENST00000469852 PCCAP05165 728 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-209ENST00000469852 CCT4P50991 539 aaKnown RBP18.71■□□□□ 0.59
COL9A3-209ENST00000469852 CASP7P55210 303 aa18.71■□□□□ 0.59
COL9A3-209ENST00000469852 C3orf67Q6ZVT6 689 aa18.71■□□□□ 0.59
COL9A3-209ENST00000469852 FTSJ3Q8IY81 847 aaKnown RBP18.71■□□□□ 0.59
COL9A3-209ENST00000469852 ZBTB38Q8NAP3 1195 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-209ENST00000469852 NPHP1O15259 732 aa18.7■□□□□ 0.58
COL9A3-209ENST00000469852 HCLS1P14317 486 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-209ENST00000469852 UBE3BQ7Z3V4 1068 aa18.7■□□□□ 0.58
COL9A3-209ENST00000469852 ZNF784Q8NCA9 323 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-209ENST00000469852 USP44Q9H0E7 712 aa18.7■□□□□ 0.58
COL9A3-209ENST00000469852 SH3TC1Q8TE82 1336 aa18.7■□□□□ 0.58
COL9A3-209ENST00000469852 GRM8O00222 908 aa18.69■□□□□ 0.58
COL9A3-209ENST00000469852 NBPF7P0C2Y1 421 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-209ENST00000469852 GTF2E1P29083 439 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-209ENST00000469852 ST5P78524 1137 aa18.69■□□□□ 0.58
COL9A3-209ENST00000469852 KLHL34Q8N239 644 aa18.69■□□□□ 0.58
COL9A3-209ENST00000469852 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-209ENST00000469852 RIC1Q4ADV7 1423 aa18.68■□□□□ 0.58
COL9A3-209ENST00000469852 MEIS3Q99687 375 aa18.68■□□□□ 0.58
COL9A3-209ENST00000469852 UTYO14607 1347 aa18.68■□□□□ 0.58
COL9A3-209ENST00000469852 IRS4O14654 1257 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-209ENST00000469852 SLC10A5Q5PT55 438 aa18.67■□□□□ 0.58
COL9A3-209ENST00000469852 ITPRIPQ8IWB1 547 aa18.67■□□□□ 0.58
COL9A3-209ENST00000469852 C9orf78Q9NZ63 289 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-209ENST00000469852 COG6Q9Y2V7 657 aa18.67■□□□□ 0.58
COL9A3-209ENST00000469852 CDHR2Q9BYE9 1310 aa18.67■□□□□ 0.58
COL9A3-209ENST00000469852 MYH3P11055 1940 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 CHD4Q14839 1912 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 PDE3AQ14432 1141 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 NLGN2Q8NFZ4 835 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 KAZALD1Q96I82 304 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 SUCLG2Q96I99 432 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 BRIP1Q9BX63 1249 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 COL4A1P02462 1669 aa18.66■□□□□ 0.58
COL9A3-209ENST00000469852 DLEC1Q9Y238 1755 aa18.65■□□□□ 0.58
COL9A3-209ENST00000469852 CHRNA5P30532 468 aa18.65■□□□□ 0.58
COL9A3-209ENST00000469852 EPHA10Q5JZY3 1008 aa18.65■□□□□ 0.58
COL9A3-209ENST00000469852 KLRG2A4D1S0 409 aaPredicted RBP18.64■□□□□ 0.57
COL9A3-209ENST00000469852 MS4A1P11836 297 aa18.64■□□□□ 0.57
COL9A3-209ENST00000469852 MVPQ14764 893 aaKnown RBP18.64■□□□□ 0.57
COL9A3-209ENST00000469852 CD2APQ9Y5K6 639 aa18.64■□□□□ 0.57
COL9A3-209ENST00000469852 TAF1P21675 1872 aa18.64■□□□□ 0.57
COL9A3-209ENST00000469852 A0A0G2JLW4 131 aa18.63■□□□□ 0.57
COL9A3-209ENST00000469852 ZBTB7BO15156 539 aaPredicted RBP18.63■□□□□ 0.57
COL9A3-209ENST00000469852 CENPBP07199 599 aaPredicted RBP18.63■□□□□ 0.57
COL9A3-209ENST00000469852 FOXO4P98177 505 aa18.63■□□□□ 0.57
COL9A3-209ENST00000469852 BRCA1P38398 1863 aaKnown RBP18.63■□□□□ 0.57
COL9A3-209ENST00000469852 PDE8AO60658 829 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 DPEP1P16444 411 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 KCNA3P22001 575 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 PDE6BP35913 854 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 CRY2Q49AN0 593 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 C2CD5Q86YS7 1000 aa18.62■□□□□ 0.57
COL9A3-209ENST00000469852 CCDC85AQ96PX6 553 aaPredicted RBP18.62■□□□□ 0.57
COL9A3-209ENST00000469852 PLA2G12BQ9BX93 195 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms