RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 CCDC39Q9UFE4 941 aa5.99□□□□□ -1.45
SF3B1-207ENST00000468925 BIVM-ERCC5R4GMW8 1640 aa5.99□□□□□ -1.45
SF3B1-207ENST00000468925 GPR37L1O60883 481 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 HSP90AB1P08238 724 aaKnown RBP5.98□□□□□ -1.45
SF3B1-207ENST00000468925 NASPP49321 788 aaPredicted RBP5.98□□□□□ -1.45
SF3B1-207ENST00000468925 SYCP1Q15431 976 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 CLEC17AQ6ZS10 378 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 MYRIPQ8NFW9 859 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 POM121Q96HA1 1249 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 CHMP4BQ9H444 224 aaKnown RBP5.98□□□□□ -1.45
SF3B1-207ENST00000468925 EFCC1Q9HA90 598 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 CALCOCO1Q9P1Z2 691 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 AMOTL2Q9Y2J4 779 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 NDUFB9Q9Y6M9 179 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 PTPN23Q9H3S7 1636 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 CUX1P39880 1505 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 CGNL1Q0VF96 1302 aa5.98□□□□□ -1.45
SF3B1-207ENST00000468925 DHX29Q7Z478 1369 aaKnown RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 PATL2C9JE40 543 aaKnown RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 RNF144AP50876 292 aaPredicted RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 ERVK-9P63128 1117 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 GAS6Q14393 721 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 LYPD4Q6UWN0 246 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 NLRP13Q86W25 1043 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 CEP120Q8N960 986 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 ZNF837Q96EG3 531 aaPredicted RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 HIRIP3Q9BW71 556 aaPredicted RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 CDCA7Q9BWT1 371 aaPredicted RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 GEMIN8Q9NWZ8 242 aaKnown RBP5.97□□□□□ -1.45
SF3B1-207ENST00000468925 ZKSCAN5Q9Y2L8 839 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 ARHGAP31Q2M1Z3 1444 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 KIF27Q86VH2 1401 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 YEATS2Q9ULM3 1422 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 KIF7Q2M1P5 1343 aa5.97□□□□□ -1.45
SF3B1-207ENST00000468925 STAU1O95793 577 aaKnown RBP5.96□□□□□ -1.46
SF3B1-207ENST00000468925 TPM3P06753 285 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 PHKA2P46019 1235 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 ZNF445P59923 1031 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 FAM50AQ14320 339 aaKnown RBP5.96□□□□□ -1.46
SF3B1-207ENST00000468925 CCDC184Q52MB2 194 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 RNF20Q5VTR2 975 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 PMFBP1Q8TBY8 1022 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 GTPBP3Q969Y2 492 aaKnown RBP5.96□□□□□ -1.46
SF3B1-207ENST00000468925 TIGD1Q96MW7 591 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 TBC1D32Q96NH3 1257 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 OSBPL3Q9H4L5 887 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 GPAMQ9HCL2 828 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 DIAPH3Q9NSV4 1193 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 TBC1D2BQ9UPU7 963 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 R3HCC1Q9Y3T6 440 aaKnown RBP5.96□□□□□ -1.46
SF3B1-207ENST00000468925 UHRF1BP1LA0JNW5 1464 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 POLA1P09884 1462 aaPredicted RBP5.96□□□□□ -1.46
SF3B1-207ENST00000468925 FYCO1Q9BQS8 1478 aa5.96□□□□□ -1.46
SF3B1-207ENST00000468925 CHAF1AQ13111 956 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-207ENST00000468925 DBN1Q16643 649 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 CYP2U1Q7Z449 544 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 HSCBQ8IWL3 235 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 DHX37Q8IY37 1157 aaKnown RBP5.95□□□□□ -1.46
SF3B1-207ENST00000468925 GALNT6Q8NCL4 622 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 SNX21Q969T3 373 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 PDLIM2Q96JY6 352 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 PANK2Q9BZ23 570 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 OGFRQ9NZT2 677 aa5.95□□□□□ -1.46
SF3B1-207ENST00000468925 ZHX1Q9UKY1 873 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-207ENST00000468925 ZNF330Q9Y3S2 320 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-207ENST00000468925 FGD6Q6ZV73 1430 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 MAP3K10Q02779 954 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 KCNA1Q09470 495 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 PDE3AQ14432 1141 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 KLHL40Q2TBA0 621 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 CCDC85AQ96PX6 553 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-207ENST00000468925 CRBNQ96SW2 442 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 CAMSAP2Q08AD1 1489 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 EFCAB5A4FU69 1503 aa5.94□□□□□ -1.46
SF3B1-207ENST00000468925 MTUS2Q5JR59 1369 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 BLMP54132 1417 aaPredicted RBP5.93□□□□□ -1.46
SF3B1-207ENST00000468925 NAIPQ13075 1403 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 NCOA3Q9Y6Q9 1424 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 BAG6P46379 1132 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 KIAA2012Q0VF49 1180 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 CLN3Q13286 438 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 TSGA10IPQ3SY00 556 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 NBPF10Q6P3W6 841 aaKnown RBP5.93□□□□□ -1.46
SF3B1-207ENST00000468925 TRIM22Q8IYM9 498 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 NBPF15Q8N660 670 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 BANK1Q8NDB2 785 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 TIMMDC1Q9NPL8 285 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 RPRD2Q5VT52 1461 aaKnown RBP5.93□□□□□ -1.46
SF3B1-207ENST00000468925 GCC2Q8IWJ2 1684 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 USP19O94966 1318 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 IGF1RP08069 1367 aa5.93□□□□□ -1.46
SF3B1-207ENST00000468925 WASLO00401 505 aaPredicted RBP5.92□□□□□ -1.46
SF3B1-207ENST00000468925 IL2RAP01589 272 aa5.92□□□□□ -1.46
SF3B1-207ENST00000468925 CELA2BP08218 269 aaPredicted RBP5.92□□□□□ -1.46
SF3B1-207ENST00000468925 SRSF11Q05519 484 aaKnown RBP5.92□□□□□ -1.46
SF3B1-207ENST00000468925 CCDC27Q2M243 656 aa5.92□□□□□ -1.46
SF3B1-207ENST00000468925 OXLD1Q5BKU9 147 aa5.92□□□□□ -1.46
SF3B1-207ENST00000468925 SMC5Q8IY18 1101 aa5.92□□□□□ -1.46
SF3B1-207ENST00000468925 CNKSR1Q969H4 720 aa5.92□□□□□ -1.46
SF3B1-207ENST00000468925 GRIP2Q9C0E4 1043 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms