RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 AFDNP55196 1824 aaKnown RBP9.27□□□□□ -0.93
COL6A3-208ENST00000468792 A0A087WZG4 1122 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 TRIM6-TRIM34B2RNG4 842 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 SGSM2O43147 1006 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 PTPN12Q05209 780 aaKnown RBP9.27□□□□□ -0.93
COL6A3-208ENST00000468792 TCIRG1Q13488 830 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 NBR1Q14596 966 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 HSP90AB3PQ58FF7 597 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 NUTM1Q86Y26 1132 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 RUFY2Q8WXA3 655 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 ERVV-1B6SEH8 477 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 CIAO1O76071 339 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 A1BGP04217 495 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 FOXO4P98177 505 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 EPHA10Q5JZY3 1008 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 CLEC17AQ6ZS10 378 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 TTLL7Q6ZT98 887 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 RILPL2Q969X0 211 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 EAF2Q96CJ1 260 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-208ENST00000468792 CWC22Q9HCG8 908 aaKnown RBP9.26□□□□□ -0.93
COL6A3-208ENST00000468792 SPATA31A5Q5VU36 1347 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 SPATA31A7Q8IWB4 1347 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 RAD50Q92878 1312 aa9.26□□□□□ -0.93
COL6A3-208ENST00000468792 RGL2O15211 777 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 ABCB7O75027 752 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 PTCD1O75127 700 aaKnown RBP9.25□□□□□ -0.93
COL6A3-208ENST00000468792 ATP5JP18859 108 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 HSPA4P34932 840 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 IL6STP40189 918 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-208ENST00000468792 TSHZ3Q63HK5 1081 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 UBE3BQ7Z3V4 1068 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 AACSQ86V21 672 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 UNC5CLQ8IV45 518 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 KCNB2Q92953 911 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 SLKQ9H2G2 1235 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-208ENST00000468792 ASAP1Q9ULH1 1129 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 PA2G4Q9UQ80 394 aaKnown RBP9.25□□□□□ -0.93
COL6A3-208ENST00000468792 MAP3K15Q6ZN16 1313 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 CDHR2Q9BYE9 1310 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 AK9Q5TCS8 1911 aa9.25□□□□□ -0.93
COL6A3-208ENST00000468792 ZNF831Q5JPB2 1677 aa9.24□□□□□ -0.93
COL6A3-208ENST00000468792 PCCAP05165 728 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-208ENST00000468792 CYP19A1P11511 503 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-208ENST00000468792 PTMSP20962 102 aa9.24□□□□□ -0.93
COL6A3-208ENST00000468792 IL15P40933 162 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-208ENST00000468792 GIGYF2Q6Y7W6 1299 aaKnown RBP9.24□□□□□ -0.93
COL6A3-208ENST00000468792 KIF6Q6ZMV9 814 aa9.24□□□□□ -0.93
COL6A3-208ENST00000468792 AK7Q96M32 723 aa9.24□□□□□ -0.93
COL6A3-208ENST00000468792 TJP1Q07157 1748 aa9.24□□□□□ -0.93
COL6A3-208ENST00000468792 ATP5J2-PTCD1G3V325 749 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 FRAT2O75474 233 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 CD2BP2O95400 341 aaKnown RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 CSF1RP07333 972 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 RAB3GAP1Q15042 981 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 DDB1Q16531 1140 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 TNNI3KQ59H18 835 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 LMBR1LQ6UX01 489 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 DNAJC10Q8IXB1 793 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 ZBTB38Q8NAP3 1195 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 INTS4Q96HW7 963 aaKnown RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 RBM42Q9BTD8 480 aaKnown RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 LSG1Q9H089 658 aaKnown RBP9.23□□□□□ -0.93
COL6A3-208ENST00000468792 ANO2Q9NQ90 1003 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 FPGT-TNNI3KV9GXZ4 949 aa9.23□□□□□ -0.93
COL6A3-208ENST00000468792 MCM4P33991 863 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 PIP4K2AP48426 406 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-208ENST00000468792 NUCB2P80303 420 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 CUL4AQ13619 759 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 KIAA1211Q6ZU35 1233 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 SMARCC1Q92922 1105 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-208ENST00000468792 SLC4A9Q96Q91 983 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 TM6SF1Q9BZW5 370 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 DIAPH3Q9NSV4 1193 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 RREB1Q92766 1687 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 JCADQ9P266 1359 aa9.22□□□□□ -0.93
COL6A3-208ENST00000468792 DDX11L8A8MPP1 907 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 EYA2O00167 538 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 EIF5P55010 431 aaKnown RBP9.21□□□□□ -0.94
COL6A3-208ENST00000468792 VPS72Q15906 364 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 ATG9AQ7Z3C6 839 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 FNBP4Q8N3X1 1017 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-208ENST00000468792 HAUS7Q99871 368 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 ZBTB3Q9H5J0 574 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 ABCC12Q96J65 1359 aa9.21□□□□□ -0.94
COL6A3-208ENST00000468792 SPEF2Q9C093 1822 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 CYP2E1P05181 493 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 HSP90AA1P07900 732 aaKnown RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 HSP90B1P14625 803 aaKnown RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 PRIM1P49642 420 aaKnown RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 NEK4P51957 841 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 TFCP2Q12800 502 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 TSGA10IPQ3SY00 556 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 NLRP10Q86W26 655 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 PROM2Q8N271 834 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 MAP4K1Q92918 833 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 GBP4Q96PP9 640 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 CCDC8Q9H0W5 538 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 ALDH8A1Q9H2A2 487 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 DBNLQ9UJU6 430 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms