RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 H7C1W4 665 aa13.47□□□□□ -0.25
MSX1-202ENST00000468421 TRIM28Q13263 835 aaKnown RBP13.47□□□□□ -0.25
MSX1-202ENST00000468421 CENPQQ7L2Z9 268 aaPredicted RBP13.47□□□□□ -0.25
MSX1-202ENST00000468421 UBE3BQ7Z3V4 1068 aa13.47□□□□□ -0.25
MSX1-202ENST00000468421 NLRP10Q86W26 655 aa13.47□□□□□ -0.25
MSX1-202ENST00000468421 AKT1S1Q96B36 256 aa13.47□□□□□ -0.25
MSX1-202ENST00000468421 NARFQ9UHQ1 456 aa13.47□□□□□ -0.25
MSX1-202ENST00000468421 USP42Q9H9J4 1324 aaKnown RBP13.46□□□□□ -0.25
MSX1-202ENST00000468421 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.46□□□□□ -0.25
MSX1-202ENST00000468421 PNMA6EA0A0J9YXQ4 647 aa13.46□□□□□ -0.25
MSX1-202ENST00000468421 SSFA2P28290 1259 aa13.46□□□□□ -0.25
MSX1-202ENST00000468421 USPL1Q5W0Q7 1092 aa13.46□□□□□ -0.25
MSX1-202ENST00000468421 DEFB132Q7Z7B7 95 aa13.46□□□□□ -0.25
MSX1-202ENST00000468421 RPAP2Q8IXW5 612 aaPredicted RBP13.46□□□□□ -0.25
MSX1-202ENST00000468421 RWDD1Q9H446 243 aaPredicted RBP13.46□□□□□ -0.25
MSX1-202ENST00000468421 ADRA2BP18089 450 aa13.45□□□□□ -0.26
MSX1-202ENST00000468421 BAG6P46379 1132 aa13.45□□□□□ -0.26
MSX1-202ENST00000468421 RTL5Q5HYW3 569 aaPredicted RBP13.45□□□□□ -0.26
MSX1-202ENST00000468421 EPHA10Q5JZY3 1008 aa13.45□□□□□ -0.26
MSX1-202ENST00000468421 TRAPPC3LQ5T215 181 aa13.45□□□□□ -0.26
MSX1-202ENST00000468421 BICC1Q9H694 974 aaKnown RBP13.45□□□□□ -0.26
MSX1-202ENST00000468421 RGL2O15211 777 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 PCCAP05165 728 aaPredicted RBP13.44□□□□□ -0.26
MSX1-202ENST00000468421 RFC4P35249 363 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 ATP8B2P98198 1209 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 SF3B2Q13435 895 aaKnown RBP13.44□□□□□ -0.26
MSX1-202ENST00000468421 CLEC4GQ6UXB4 293 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 SYNE4Q8N205 404 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 ANO8Q9HCE9 1232 aaPredicted RBP13.44□□□□□ -0.26
MSX1-202ENST00000468421 NIP7Q9Y221 180 aaKnown RBP eCLIP13.44□□□□□ -0.26
MSX1-202ENST00000468421 ZNF652Q9Y2D9 606 aa13.44□□□□□ -0.26
MSX1-202ENST00000468421 ZPR1O75312 459 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 HMGB2P26583 209 aaKnown RBP13.43□□□□□ -0.26
MSX1-202ENST00000468421 MTX1Q13505 466 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 SUSD4Q5VX71 490 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 TBC1D9BQ66K14 1250 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 PPP1R42Q7Z4L9 355 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 SKAP1Q86WV1 359 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 SMC5Q8IY18 1101 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 UPF1Q92900 1129 aaKnown RBP eCLIP13.43□□□□□ -0.26
MSX1-202ENST00000468421 FAM89AQ96GI7 184 aa13.43□□□□□ -0.26
MSX1-202ENST00000468421 CDHR2Q9BYE9 1310 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 NTSR2O95665 410 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 FOXO4P98177 505 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 POLA2Q14181 598 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 ZBTB38Q8NAP3 1195 aaPredicted RBP13.42□□□□□ -0.26
MSX1-202ENST00000468421 SSH3Q8TE77 659 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 TFCP2L1Q9NZI6 479 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 HDAC5Q9UQL6 1122 aa13.42□□□□□ -0.26
MSX1-202ENST00000468421 PNPLA7Q6ZV29 1317 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 TNRC6CQ9HCJ0 1690 aaKnown RBP13.41□□□□□ -0.26
MSX1-202ENST00000468421 FAM177BA6PVY3 158 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 HMMRO75330 724 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 RABL6Q3YEC7 729 aaPredicted RBP13.41□□□□□ -0.26
MSX1-202ENST00000468421 PARP10Q53GL7 1025 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 BICDL1Q6ZP65 573 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 COL23A1Q86Y22 540 aaPredicted RBP13.41□□□□□ -0.26
MSX1-202ENST00000468421 DCTPP1Q9H773 170 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 TRMT112Q9UI30 125 aaKnown RBP13.41□□□□□ -0.26
MSX1-202ENST00000468421 PDZRN3Q9UPQ7 1066 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 SPEF2Q9C093 1822 aa13.41□□□□□ -0.26
MSX1-202ENST00000468421 SRGAP3O43295 1099 aa13.4□□□□□ -0.26
MSX1-202ENST00000468421 GYS1P13807 737 aa13.4□□□□□ -0.26
MSX1-202ENST00000468421 UTP14AQ9BVJ6 771 aaKnown RBP13.4□□□□□ -0.26
MSX1-202ENST00000468421 PLA2G12BQ9BX93 195 aa13.4□□□□□ -0.26
MSX1-202ENST00000468421 NRXN2Q9P2S2 1712 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 SLC15A2Q16348 729 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 LMBR1LQ6UX01 489 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 NUTM1Q86Y26 1132 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 CCDC125Q86Z20 511 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 GCC1Q96CN9 775 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 SH3TC1Q8TE82 1336 aa13.39□□□□□ -0.27
MSX1-202ENST00000468421 ABCC12Q96J65 1359 aa13.38□□□□□ -0.27
MSX1-202ENST00000468421 IRS4O14654 1257 aaPredicted RBP13.38□□□□□ -0.27
MSX1-202ENST00000468421 RFX5P48382 616 aaPredicted RBP13.38□□□□□ -0.27
MSX1-202ENST00000468421 NFIXQ14938 502 aa13.38□□□□□ -0.27
MSX1-202ENST00000468421 STK32BQ9NY57 414 aa13.38□□□□□ -0.27
MSX1-202ENST00000468421 PA2G4Q9UQ80 394 aaKnown RBP13.38□□□□□ -0.27
MSX1-202ENST00000468421 EXOC6BQ9Y2D4 811 aa13.38□□□□□ -0.27
MSX1-202ENST00000468421 TAF1P21675 1872 aa13.38□□□□□ -0.27
MSX1-202ENST00000468421 COL4A1P02462 1669 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 CARMIL3Q8ND23 1372 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 ERFEQ4G0M1 354 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 FLAD1Q8NFF5 587 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 SETDB2Q96T68 719 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 LRP5O75197 1615 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 ANKRD31Q8N7Z5 1873 aa13.37□□□□□ -0.27
MSX1-202ENST00000468421 MSH5O43196 834 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 PDE8AO60658 829 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 HCLS1P14317 486 aaPredicted RBP13.36□□□□□ -0.27
MSX1-202ENST00000468421 CTSWP56202 376 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 NUCB1Q02818 461 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 KLHDC4Q8TBB5 520 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 CHMP3Q9Y3E7 222 aa13.36□□□□□ -0.27
MSX1-202ENST00000468421 A0A1B0GUL6 1792 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 APBB1O00213 710 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 SMARCA5O60264 1052 aaPredicted RBP13.35□□□□□ -0.27
MSX1-202ENST00000468421 CSF1RP07333 972 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 PDE4AP27815 886 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 TM4SF1P30408 202 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms