RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 AIMP1Q12904 312 aaKnown RBP24.79■■□□□ 1.56
COL7A1-207ENST00000467985 DBF4Q9UBU7 674 aaPredicted RBP24.79■■□□□ 1.56
COL7A1-207ENST00000467985 RNF123Q5XPI4 1314 aa24.79■■□□□ 1.56
COL7A1-207ENST00000467985 CHPF2Q9P2E5 772 aa24.78■■□□□ 1.56
COL7A1-207ENST00000467985 DUSP27Q5VZP5 1158 aa24.77■■□□□ 1.56
COL7A1-207ENST00000467985 DPY19L2Q6NUT2 758 aa24.77■■□□□ 1.56
COL7A1-207ENST00000467985 RTKN2Q8IZC4 609 aa24.77■■□□□ 1.56
COL7A1-207ENST00000467985 RBM46Q8TBY0 533 aaKnown RBP24.77■■□□□ 1.56
COL7A1-207ENST00000467985 RPGRQ92834 1020 aaKnown RBP24.77■■□□□ 1.56
COL7A1-207ENST00000467985 UTP14AQ9BVJ6 771 aaKnown RBP24.77■■□□□ 1.56
COL7A1-207ENST00000467985 RRAGCQ9HB90 399 aa24.77■■□□□ 1.56
COL7A1-207ENST00000467985 ANKRD36CQ5JPF3 1778 aa24.77■■□□□ 1.56
COL7A1-207ENST00000467985 HOXA10P31260 410 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-207ENST00000467985 HYPKQ9NX55 129 aa24.76■■□□□ 1.55
COL7A1-207ENST00000467985 CCDC184Q52MB2 194 aa24.75■■□□□ 1.55
COL7A1-207ENST00000467985 CHMP4AQ9BY43 222 aa24.75■■□□□ 1.55
COL7A1-207ENST00000467985 FKBP4Q02790 459 aaKnown RBP eCLIP24.74■■□□□ 1.55
COL7A1-207ENST00000467985 TCIRG1Q13488 830 aa24.74■■□□□ 1.55
COL7A1-207ENST00000467985 SLC10A5Q5PT55 438 aa24.74■■□□□ 1.55
COL7A1-207ENST00000467985 RBM17Q96I25 401 aaKnown RBP24.74■■□□□ 1.55
COL7A1-207ENST00000467985 VEGFAP15692 232 aaPredicted RBP24.73■■□□□ 1.55
COL7A1-207ENST00000467985 CC2D2BQ6DHV5 1058 aa24.73■■□□□ 1.55
COL7A1-207ENST00000467985 PLBD2Q8NHP8 589 aa24.73■■□□□ 1.55
COL7A1-207ENST00000467985 NLRP3Q96P20 1036 aa24.73■■□□□ 1.55
COL7A1-207ENST00000467985 MRS2Q9HD23 443 aa24.73■■□□□ 1.55
COL7A1-207ENST00000467985 FSTL1Q12841 308 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 CCDC27Q2M243 656 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 GRIPAP1Q4V328 841 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 ANKRD13DQ6ZTN6 518 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 NLRP10Q86W26 655 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 CRAMP1Q96RY5 1269 aa24.72■■□□□ 1.55
COL7A1-207ENST00000467985 NCBP3Q53F19 620 aaKnown RBP24.7■■□□□ 1.54
COL7A1-207ENST00000467985 APLP1P51693 650 aa24.69■■□□□ 1.54
COL7A1-207ENST00000467985 PSMD1Q99460 953 aa24.69■■□□□ 1.54
COL7A1-207ENST00000467985 TRMT112Q9UI30 125 aaKnown RBP24.69■■□□□ 1.54
COL7A1-207ENST00000467985 WDR90Q96KV7 1748 aa24.69■■□□□ 1.54
COL7A1-207ENST00000467985 OLFM4Q6UX06 510 aa24.68■■□□□ 1.54
COL7A1-207ENST00000467985 SH3TC1Q8TE82 1336 aa24.67■■□□□ 1.54
COL7A1-207ENST00000467985 ZNF277Q9NRM2 450 aaPredicted RBP24.67■■□□□ 1.54
COL7A1-207ENST00000467985 C3orf67Q6ZVT6 689 aa24.66■■□□□ 1.54
COL7A1-207ENST00000467985 SYNE4Q8N205 404 aa24.66■■□□□ 1.54
COL7A1-207ENST00000467985 SMC1BQ8NDV3 1235 aa24.66■■□□□ 1.54
COL7A1-207ENST00000467985 TMX4Q9H1E5 349 aaPredicted RBP24.66■■□□□ 1.54
COL7A1-207ENST00000467985 ELL2O00472 640 aaPredicted RBP24.65■■□□□ 1.54
COL7A1-207ENST00000467985 PPEF1O14829 653 aaPredicted RBP24.65■■□□□ 1.54
COL7A1-207ENST00000467985 GOLGA2Q08379 1002 aa24.65■■□□□ 1.54
COL7A1-207ENST00000467985 WWC1Q8IX03 1113 aa24.65■■□□□ 1.54
COL7A1-207ENST00000467985 C8orf58Q8NAV2 365 aa24.65■■□□□ 1.54
COL7A1-207ENST00000467985 SNED1Q8TER0 1413 aa24.65■■□□□ 1.54
COL7A1-207ENST00000467985 IL16Q14005 1332 aa24.64■■□□□ 1.54
COL7A1-207ENST00000467985 IARSP41252 1262 aaKnown RBP24.64■■□□□ 1.54
COL7A1-207ENST00000467985 TRIM28Q13263 835 aaKnown RBP24.64■■□□□ 1.54
COL7A1-207ENST00000467985 CCDC30Q5VVM6 783 aa24.64■■□□□ 1.54
COL7A1-207ENST00000467985 ISCA1Q9BUE6 129 aa24.64■■□□□ 1.54
COL7A1-207ENST00000467985 HCLS1P14317 486 aaPredicted RBP24.63■■□□□ 1.53
COL7A1-207ENST00000467985 BBOX1O75936 387 aa24.62■■□□□ 1.53
COL7A1-207ENST00000467985 RIC3Q7Z5B4 369 aa24.62■■□□□ 1.53
COL7A1-207ENST00000467985 POTECB2RU33 542 aa24.61■■□□□ 1.53
COL7A1-207ENST00000467985 DDNO94850 711 aaPredicted RBP24.61■■□□□ 1.53
COL7A1-207ENST00000467985 DDX46Q7L014 1031 aaKnown RBP24.61■■□□□ 1.53
COL7A1-207ENST00000467985 JDP2Q8WYK2 163 aa24.61■■□□□ 1.53
COL7A1-207ENST00000467985 ATP6V0A2Q9Y487 856 aa24.61■■□□□ 1.53
COL7A1-207ENST00000467985 LAMB2P55268 1798 aa24.61■■□□□ 1.53
COL7A1-207ENST00000467985 ABCC4O15439 1325 aa24.61■■□□□ 1.53
COL7A1-207ENST00000467985 IQCA1LA6NCM1 817 aa24.6■■□□□ 1.53
COL7A1-207ENST00000467985 ATP5J2-PTCD1G3V325 749 aa24.6■■□□□ 1.53
COL7A1-207ENST00000467985 DDX58O95786 925 aaKnown RBP24.6■■□□□ 1.53
COL7A1-207ENST00000467985 TSR2Q969E8 191 aaKnown RBP24.6■■□□□ 1.53
COL7A1-207ENST00000467985 PHAXQ9H814 394 aaKnown RBP24.6■■□□□ 1.53
COL7A1-207ENST00000467985 L3MBTL3Q96JM7 780 aaPredicted RBP24.59■■□□□ 1.53
COL7A1-207ENST00000467985 FZD9O00144 591 aa24.58■■□□□ 1.53
COL7A1-207ENST00000467985 TCERG1O14776 1098 aaKnown RBP24.58■■□□□ 1.53
COL7A1-207ENST00000467985 HSP90B1P14625 803 aaKnown RBP24.58■■□□□ 1.53
COL7A1-207ENST00000467985 TMC4Q7Z404 712 aa24.58■■□□□ 1.53
COL7A1-207ENST00000467985 FAM89AQ96GI7 184 aa24.58■■□□□ 1.53
COL7A1-207ENST00000467985 VPS33BQ9H267 617 aa24.58■■□□□ 1.53
COL7A1-207ENST00000467985 SP8Q8IXZ3 490 aa24.57■■□□□ 1.52
COL7A1-207ENST00000467985 TSPYL6Q8N831 410 aa24.57■■□□□ 1.52
COL7A1-207ENST00000467985 STK31Q9BXU1 1019 aa24.57■■□□□ 1.52
COL7A1-207ENST00000467985 SCN4AP35499 1836 aa24.56■■□□□ 1.52
COL7A1-207ENST00000467985 DDX60Q8IY21 1712 aaKnown RBP24.56■■□□□ 1.52
COL7A1-207ENST00000467985 GRAPQ13588 217 aa24.56■■□□□ 1.52
COL7A1-207ENST00000467985 WDR63Q8IWG1 891 aa24.56■■□□□ 1.52
COL7A1-207ENST00000467985 SUPT20HQ8NEM7 779 aa24.56■■□□□ 1.52
COL7A1-207ENST00000467985 GRAPLQ8TC17 118 aaPredicted RBP24.56■■□□□ 1.52
COL7A1-207ENST00000467985 ZNF541Q9H0D2 1346 aa24.56■■□□□ 1.52
COL7A1-207ENST00000467985 TWISTNBQ3B726 338 aaPredicted RBP24.55■■□□□ 1.52
COL7A1-207ENST00000467985 LARGE2Q8N3Y3 721 aa24.55■■□□□ 1.52
COL7A1-207ENST00000467985 EIF6P56537 245 aaKnown RBP24.54■■□□□ 1.52
COL7A1-207ENST00000467985 SF3B3Q15393 1217 aaKnown RBP24.54■■□□□ 1.52
COL7A1-207ENST00000467985 GPC2Q8N158 579 aa24.54■■□□□ 1.52
COL7A1-207ENST00000467985 ZBTB38Q8NAP3 1195 aaPredicted RBP24.54■■□□□ 1.52
COL7A1-207ENST00000467985 CCDC191Q8NCU4 936 aa24.54■■□□□ 1.52
COL7A1-207ENST00000467985 IRS4O14654 1257 aaPredicted RBP24.53■■□□□ 1.52
COL7A1-207ENST00000467985 ZNF428Q96B54 188 aa24.53■■□□□ 1.52
COL7A1-207ENST00000467985 MYD88Q99836 296 aa24.53■■□□□ 1.52
COL7A1-207ENST00000467985 METTL22Q9BUU2 404 aaPredicted RBP24.53■■□□□ 1.52
COL7A1-207ENST00000467985 RTFDC1Q9BY42 306 aaPredicted RBP24.53■■□□□ 1.52
COL7A1-207ENST00000467985 DPP8Q6V1X1 898 aaPredicted RBP24.52■■□□□ 1.52
COL7A1-207ENST00000467985 PPIP5K2O43314 1243 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms