RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 PPP1R42Q7Z4L9 355 aa16.24■□□□□ 0.19
COL4A1-202ENST00000467182 NPM2Q86SE8 214 aaKnown RBP16.24■□□□□ 0.19
COL4A1-202ENST00000467182 BICC1Q9H694 974 aaKnown RBP16.24■□□□□ 0.19
COL4A1-202ENST00000467182 NARFQ9UHQ1 456 aa16.24■□□□□ 0.19
COL4A1-202ENST00000467182 HDAC5Q9UQL6 1122 aa16.24■□□□□ 0.19
COL4A1-202ENST00000467182 COL24A1Q17RW2 1714 aa16.24■□□□□ 0.19
COL4A1-202ENST00000467182 HMMRO75330 724 aa16.23■□□□□ 0.19
COL4A1-202ENST00000467182 PCCAP05165 728 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-202ENST00000467182 GPTP24298 496 aa16.23■□□□□ 0.19
COL4A1-202ENST00000467182 NUCB1Q02818 461 aa16.23■□□□□ 0.19
COL4A1-202ENST00000467182 RTCBQ9Y3I0 505 aaKnown RBP16.23■□□□□ 0.19
COL4A1-202ENST00000467182 FOXO4P98177 505 aa16.22■□□□□ 0.19
COL4A1-202ENST00000467182 CLEC4GQ6UXB4 293 aa16.22■□□□□ 0.19
COL4A1-202ENST00000467182 ARHGEF1Q92888 912 aaKnown RBP16.22■□□□□ 0.19
COL4A1-202ENST00000467182 AK7Q96M32 723 aa16.22■□□□□ 0.19
COL4A1-202ENST00000467182 LAMB2P55268 1798 aa16.22■□□□□ 0.19
COL4A1-202ENST00000467182 CDHR2Q9BYE9 1310 aa16.21■□□□□ 0.19
COL4A1-202ENST00000467182 SRGAP3O43295 1099 aa16.21■□□□□ 0.19
COL4A1-202ENST00000467182 PDE4AP27815 886 aa16.21■□□□□ 0.19
COL4A1-202ENST00000467182 ZBTB38Q8NAP3 1195 aaPredicted RBP16.21■□□□□ 0.19
COL4A1-202ENST00000467182 AKT1S1Q96B36 256 aa16.21■□□□□ 0.19
COL4A1-202ENST00000467182 SRP68Q9UHB9 627 aaKnown RBP16.21■□□□□ 0.19
COL4A1-202ENST00000467182 DDX60Q8IY21 1712 aaKnown RBP16.21■□□□□ 0.19
COL4A1-202ENST00000467182 USP42Q9H9J4 1324 aaKnown RBP16.2■□□□□ 0.18
COL4A1-202ENST00000467182 SUSD4Q5VX71 490 aa16.2■□□□□ 0.18
COL4A1-202ENST00000467182 USPL1Q5W0Q7 1092 aa16.2■□□□□ 0.18
COL4A1-202ENST00000467182 CAMKK2Q96RR4 588 aa16.2■□□□□ 0.18
COL4A1-202ENST00000467182 PLA2G12BQ9BX93 195 aa16.2■□□□□ 0.18
COL4A1-202ENST00000467182 ADRA2BP18089 450 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 RFX5P48382 616 aaPredicted RBP16.19■□□□□ 0.18
COL4A1-202ENST00000467182 ZNF827Q17R98 1081 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 RTL5Q5HYW3 569 aaPredicted RBP16.19■□□□□ 0.18
COL4A1-202ENST00000467182 TRAPPC3LQ5T215 181 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 CHD1LQ86WJ1 897 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 SYNE4Q8N205 404 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 FAM89AQ96GI7 184 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 ZNF652Q9Y2D9 606 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 MYH3P11055 1940 aa16.19■□□□□ 0.18
COL4A1-202ENST00000467182 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.18■□□□□ 0.18
COL4A1-202ENST00000467182 PHF14O94880 888 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 NTSR2O95665 410 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 SSFA2P28290 1259 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 PARP10Q53GL7 1025 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 NIP7Q9Y221 180 aaKnown RBP eCLIP16.18■□□□□ 0.18
COL4A1-202ENST00000467182 EXOC6BQ9Y2D4 811 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 NOP58Q9Y2X3 529 aaKnown RBP16.18■□□□□ 0.18
COL4A1-202ENST00000467182 CASZ1Q86V15 1759 aa16.18■□□□□ 0.18
COL4A1-202ENST00000467182 QSER1Q2KHR3 1735 aa16.17■□□□□ 0.18
COL4A1-202ENST00000467182 HMGB2P26583 209 aaKnown RBP16.17■□□□□ 0.18
COL4A1-202ENST00000467182 ANKRD45Q5TZF3 282 aa16.17■□□□□ 0.18
COL4A1-202ENST00000467182 TBC1D9BQ66K14 1250 aa16.17■□□□□ 0.18
COL4A1-202ENST00000467182 CSF1RP07333 972 aa16.16■□□□□ 0.18
COL4A1-202ENST00000467182 EN1Q05925 392 aaPredicted RBP16.16■□□□□ 0.18
COL4A1-202ENST00000467182 EZH2Q15910 746 aaKnown RBP16.16■□□□□ 0.18
COL4A1-202ENST00000467182 LMBR1LQ6UX01 489 aa16.16■□□□□ 0.18
COL4A1-202ENST00000467182 LNPKQ9C0E8 428 aa16.16■□□□□ 0.18
COL4A1-202ENST00000467182 TRMT112Q9UI30 125 aaKnown RBP16.16■□□□□ 0.18
COL4A1-202ENST00000467182 ZPR1O75312 459 aa16.15■□□□□ 0.18
COL4A1-202ENST00000467182 RFC4P35249 363 aa16.15■□□□□ 0.18
COL4A1-202ENST00000467182 RGS3P49796 1198 aa16.15■□□□□ 0.18
COL4A1-202ENST00000467182 UTP14AQ9BVJ6 771 aaKnown RBP16.15■□□□□ 0.18
COL4A1-202ENST00000467182 PA2G4Q9UQ80 394 aaKnown RBP16.15■□□□□ 0.18
COL4A1-202ENST00000467182 IRS4O14654 1257 aaPredicted RBP16.14■□□□□ 0.17
COL4A1-202ENST00000467182 SMARCA5O60264 1052 aaPredicted RBP16.14■□□□□ 0.17
COL4A1-202ENST00000467182 SURF6O75683 361 aaKnown RBP16.14■□□□□ 0.17
COL4A1-202ENST00000467182 PTPN12Q05209 780 aaKnown RBP16.14■□□□□ 0.17
COL4A1-202ENST00000467182 COPRSQ9NQ92 184 aa16.14■□□□□ 0.17
COL4A1-202ENST00000467182 SH3TC1Q8TE82 1336 aa16.14■□□□□ 0.17
COL4A1-202ENST00000467182 PDE8AO60658 829 aa16.13■□□□□ 0.17
COL4A1-202ENST00000467182 RAB11FIP3O75154 756 aa16.13■□□□□ 0.17
COL4A1-202ENST00000467182 GYS1P13807 737 aa16.13■□□□□ 0.17
COL4A1-202ENST00000467182 KLHDC4Q8TBB5 520 aa16.13■□□□□ 0.17
COL4A1-202ENST00000467182 C16orf71Q8IYS4 520 aaPredicted RBP16.12■□□□□ 0.17
COL4A1-202ENST00000467182 PELP1Q8IZL8 1130 aaKnown RBP16.12■□□□□ 0.17
COL4A1-202ENST00000467182 TTLL11Q8NHH1 800 aa16.12■□□□□ 0.17
COL4A1-202ENST00000467182 ANO8Q9HCE9 1232 aaPredicted RBP16.12■□□□□ 0.17
COL4A1-202ENST00000467182 SALL3Q9BXA9 1300 aa16.12■□□□□ 0.17
COL4A1-202ENST00000467182 LRP5O75197 1615 aa16.12■□□□□ 0.17
COL4A1-202ENST00000467182 FAM177BA6PVY3 158 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 APBB1O00213 710 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 SASH1O94885 1247 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 CTSWP56202 376 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 NFIXQ14938 502 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 BICDL1Q6ZP65 573 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 DEFB132Q7Z7B7 95 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 COL23A1Q86Y22 540 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-202ENST00000467182 NUTM1Q86Y26 1132 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 RHPN1Q8TCX5 695 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 LRRCC1Q9C099 1032 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 PNPLA7Q6ZV29 1317 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 ABCC12Q96J65 1359 aa16.11■□□□□ 0.17
COL4A1-202ENST00000467182 HCLS1P14317 486 aaPredicted RBP16.1■□□□□ 0.17
COL4A1-202ENST00000467182 TM4SF1P30408 202 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 BAG6P46379 1132 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 FAM161AQ3B820 660 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 ERFEQ4G0M1 354 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 HSP90AB4PQ58FF6 505 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 SLC10A5Q5PT55 438 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 PLEKHM2Q8IWE5 1019 aa16.1■□□□□ 0.17
COL4A1-202ENST00000467182 OTUD7AQ8TE49 926 aaPredicted RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms